Query= MSMg01no302_i04.b1 MSMg01no302_i04.b1 CHROMAT_FILE:
MSMg01no302_i04.b1 PHD_FILE: MSMg01no302_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:10 2005
(332 letters)
>mm_chr4_30140947_30141678
Length = 732
Score = 576 bits (298), Expect = e-169
Identities = 322/330 (97%), Gaps = 2/330 (0%)
Strand = Plus / Minus
Query: 4 ggaattcttttatatatcttattgatttttattttgaaaatttcatatataaataacatg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ggaattcttttatatatcttattgatttttattttgaaaatttcatatataaataacatg 529
Query: 64 tttacattaacctttgcctctttcctctaagacaagtcttgtttacctccaatctcagat 123
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 528 tttacattaaccattgtctctttcctctaagacaagtcttgtttacctccaatctccgat 469
Query: 124 caatgactgtcttttctcaataattattgttttacaaatatgtatacaaacattatacac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 caatgactgtcttttctcaataattattgttttacaaatatgtatacaaacattatacac 409
Query: 184 acacagtgactttacaaatgggaagactgaatctctttca-tctagtagtcttgagttac 242
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 408 acacagtgactttacaaatgggaagactgaatctctttcattc-agtagtcttgagttac 350
Query: 243 ttatgactttatttaggatatcccatgatatttccaatcaccactttgtcatgtcaattg 302
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ttattactttatttaggatatcccatgatatttccaatcaccactttgtcatgtcaattg 290
Query: 303 gcattatttttcaagttaatgtatcattga 332
||||||||||||||||||| |||| |||||
Sbjct: 289 gcattatttttcaagttaaggtattattga 260
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space: 233529
Effective search space used: 233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no302_i04.g1 MSMg01no302_i04.g1 CHROMAT_FILE:
MSMg01no302_i04.g1 PHD_FILE: MSMg01no302_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:10 2005
(291 letters)
>mm_chr4_30012619_30013309
Length = 691
Score = 563 bits (291), Expect = e-165
Identities = 291/291 (100%)
Strand = Plus / Plus
Query: 1 aaatatataattctaaaaaattaagaacatgttcaaacaaatatatatgggcataagttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatatataattctaaaaaattaagaacatgttcaaacaaatatatatgggcataagttt 260
Query: 61 caaaagaaagttatagctggcttacaaggatgtgaaatgcaaaagtgtcactaattgtaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaaagaaagttatagctggcttacaaggatgtgaaatgcaaaagtgtcactaattgtaa 320
Query: 121 gggaaatgcaagaaccattaagatggctgagcaaagagatgtgaaatattaatgattata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggaaatgcaagaaccattaagatggctgagcaaagagatgtgaaatattaatgattata 380
Query: 181 tgagtacctacaatcttctcagacattctacacacaactgtgaaagctttaaatgacttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagtacctacaatcttctcagacattctacacacaactgtgaaagctttaaatgacttt 440
Query: 241 agcatctttctcttagtcgcctttggtgttaaacaaatatctaatctgtga 291
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcatctttctcttagtcgcctttggtgttaaacaaatatctaatctgtga 491
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
