BAC Information

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BAC

Clone NameMSMg01-302J18
Chromosome4 (Build37)
Map Location 75,510,602 - 75,510,884
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC636847, 3110001D03Rik, LOC623529, LOC100039833, LOC100039884
Downstream geneLOC667845, Ptprd, LOC667858, LOC667862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302J18.T7 (MSMg01no302_j18.b1)MSMg01-302J18.TJ (MSMg01no302_j18.g1)
ACCAG428449AG428450
length758770
length of high quality
(start - end)
672 (61 - 732)285 (70 - 354)
definitionCHROMAT_FILE: MSMg01no302_j18.b1 PHD_FILE: MSMg01no302_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:17 2005CHROMAT_FILE: MSMg01no302_j18.g1 PHD_FILE: MSMg01no302_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAA
CACATCACCTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGG
ACACAGTGAAACTAACAGAAGTTATGAAACAAATGGATCTGACAGATATG
TACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACC
TCATGGTACCTTCTCTAAAACTGAACACATAATTGGTCACAAAACAGGCC
TCAACAGATACAAAAATATTGAAATTGTCCCAGGCATCCTATTAGATCAC
CATGGACTAAGGTTGATCTTCAATAACAACATAAATAATAGAAAGCCAAC
ATTCAGAAGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGG
AAGGAACAAAGAAAGAAATAGAGGACTTGTTAGAGTTTAATGAAAATGAA
GCCACAACATACCCAAAATTATGGGACCCAATGAAAGCATTTCTAAGAGG
AAAACTCATAGCTCTGAGTTCCTCCAAAAAGAAACTAGAGAGCACACATT
AGCAGCTTGACAACATACCCAAAAGCTCTAGACCAAAAGGAAGCAAATTC
ACCCAAGAGGAGGAGACAATATCAAACTCAGGGGTGAAATCAACCAAGTG
GAAAAAAAGAACTATTCAAAGAATCAACCAATTGAGAAGCTGGTTCTTTG
AGAAAATCAACAACAAGATAGATAAACCCTTAGCCAGACTCACTATAGGG
CACAGGGN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAATACATTCAAGGCCCAGTTTCCTTTGCTT
CTTTCTCACTTACTTTGAGGAAGTTGATTCTGGTTACACCCAGGTCATCC
CAAGCTCACACCCTCCAGGATTTTGTCTCCTCATCAGCCTCAGTTAAACA
CCAGGAAGTAGGATTGCTTTCTTCAATGAGTTTCTGAAGCCTCCTTTGCT
GGGTTTCCGTCAGTTTGTACCTCTCCATCCGTTGACACTGCTAGATCAGG
GCTGATGGAGGATGACAGACCTACCTCTTCCTGAGGCAGAATTGTTGTTT
TATTTTTTATCAACTCGCCCCGCCCTTCCACTGATGTGACACTGTAAACC
TGGGGTACGCCGCCTCCAGAGACTTATAACATGGAAAAGAGGGAACTTTG
GAAATGCAAGCATCAAAGTGCAGGACAATTCCCCTGCAATCTGGAGGTGG
TAGATATCAGGGAGACGTTGTATATGGTGATTTTTTTTACATTCTTTCAC
CAGCGTTTTTTTTTATTGCTTTTTACGAGACCTCTGTAACTCCACTTCTA
TTCTAGTTTTACCCTTCCGTCCATAGCCTTTTTTTCCTTCTCTTTCCTTT
TCTATATTCCGCATTTCATTCTGTCTCTCGCCTGTTTTTCTTTTATGCCT
TCTTTCCTTTTTTTTATCCAACTTTTACTCACTATATAATCTATGTTACC
CCTTTTTTCTATCCCTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_j18.g1 MSMg01no302_j18.g1 CHROMAT_FILE:
MSMg01no302_j18.g1 PHD_FILE: MSMg01no302_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:17 2005
         (285 letters)



>mm_chr4_75510402_75511086
          Length = 685

 Score =  503 bits (260), Expect = e-147
 Identities = 278/284 (97%), Gaps = 2/284 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatacattcaaggcccagtttcctttgcttctttctcacttactttgaggaagttgatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 483 aaatacattcaaggcccagtttcctttgcttctttctcacttactttgaggaagtggatt 424

                                                                       
Query: 61  ctggttacacccaggtcatcccaagctcacaccctccaggattttgtctcctcatcagcc 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ctggttacacctaggtcatcccaagctcacaccctccaggattttgtctcctcatcagcc 364

                                                                       
Query: 121 tcagttaaacaccaggaagtaggattgctttcttcaatgagtttctgaagcctcctttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tcagttaaacaccaggaagtaggattgctttcttcaatgagtttctgaagcctcctttgc 304

                                                                       
Query: 181 tgggtttccgtcagtttgtacctctccatccgttgacactgctagatcagggctgatgga 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tgggtttccttcagtttgtacctctccatccgttgacactgctagatcagggctgatgga 244

                                                       
Query: 241 gg-atgacagacctacctcttcctgaggcagaattgttgtttta 283
           || | |||||||||||||||||| ||||||||||||||||||||
Sbjct: 243 ggca-gacagacctacctcttccagaggcagaattgttgtttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)