XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGAG
ATTCTCCTGCTTGTTGCCTCTCAAGTGCTGGCACTGAAGGAATGCACCAC
CACTACTCAGACTGGAAATTTTCCTCAATTCCCTTTTTCCTGTATTTAAG
AGATAGCGTGAATGTGAGAACCAGTTTTGGTGTATATGTAGATGATGCAG
GGCTACTGGGAAACAAATTGGAAACTGTTCCATGAAAGAGTATGTCTGCC
CATAGGGCTGTGCGTACATACATGTGTCCATGCATGTGTGTGCACATGCA
CACATGTGCTTGTCTCCCCTGACCCCTTTCATTACACTTTCTGAAGTGCT
GAGGCTGTGTCTTATGTTGGCCGCACCCCAATGAGGTCATGCTGACAGCC
CAAGGCTCAATGAGTGAAGATTGAAACGCTCATCCAGCAAGAATTTTGGC
TGCTTGTCATTGTCAGAAAGGCTGCCAGCAGAAAGTGAACAGCCAGGCCC
GGCTTAGTGAGCAATGGCTTTCCTGCAACAAAAAAAAAGTCTGTTTATTT
TTCACCTTTGAAAGATCTTCTTAGAAAATCTGGGCTGGGAAGGGATTAGC
GTTCACTTTTCTATCCCAGATGCCCGGTTCTCTCTCAGTGCAGATGTGAG
GCAGGTGATTTCCCTTTAGATGCCGGGGAAAGCGAAGCAACTGGCAGTTT
TGTCTGCATTCAGCCATCGAATCTCAAAGAGGTAGTAGCTTTGCCCTG

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTAAGGTATTGAATACATGAAAGCTATGAAGAGC
AATTACCATTGATAGTGGCAGAGTCTTGCAGGTTTGAGCACTAGCACTCT
CATGATCTGAGGACAGAAAAGAAGATATAAACAGTGGAATAGTGTCAGAA
ACAGGGAGAAAAGGAGCAGAACCACACAATGTTGATGATAATGGAGATCG
CTTGGGGACGTACTTTGAGTATACACTAAATACTTATATGAAGGTGTGAT
CCCCAGATGTTGGTAAGGGAAGGTGCTGTGAGATTTTAAGAGGGGATGCC
TAGTAGGATCNCTGCGTACNTGGCGATACCCCCTGAAAAGAAATCATGAG
ACCTCTGCTTCTCAATCTCCTCAAAAAAAAAAAAAAATTGTGAGGGTTGA
CTCCCACATACAATACCGCCAATGCCACCCAAGACCTATACCAGTAAAGC
AAGCAAATGGCAGTCATGGTCCTGGTTTTGGACCTTCAAACATGTGAGCT
TATTTGACTTTCTGTATTAAGCTAGTTGCCTCAGTATTTGTTGTAGTGAA
GCAAAGCTGACTGATAGAGCTAGATGAGGCATTCAGGAGACAAAGACGCC
TCAGGCAGGTAGTGAAATCTCCTCTGGGGCCAGGACTATTATCCTGTCCA
GTTTACTGACGAAGAAAGTCAGAGAGGAGCTCCAGGATGGCAG

Query= MSMg01no302_k21.b1 MSMg01no302_k21.b1 CHROMAT_FILE:
MSMg01no302_k21.b1 PHD_FILE: MSMg01no302_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:22 2005
         (323 letters)



>mm_chr4_99853875_99854597
          Length = 723

 Score =  594 bits (307), Expect = e-174
 Identities = 316/319 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagagattctcctgcttgttgcctctcaagtgctggcactgaaggaatgcaccac 64
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 205 gaattcagagattctcctgcttgttgcctcccaagtgctggcactgaaggaatgcaccac 264

                                                                       
Query: 65  cactactcagactggaaattttcctcaattccctttttcctgtatttaagagatagcgtg 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cactactcagactgggaattttcctcaattccctttttcctgtatttaagagatagcgtg 324

                                                                       
Query: 125 aatgtgagaaccagttttggtgtatatgtagatgatgcagggctactgggaaacaaattg 184
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 325 aatgtgagaaccagttttggtgtatatgtagatgctgcagggctactgggaaacaaattg 384

                                                                       
Query: 185 gaaactgttccatgaaagagtatgtctgcccatagggctgtgcgtacatacatgtgtcca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaaactgttccatgaaagagtatgtctgcccatagggctgtgcgtacatacatgtgtcca 444

                                                                       
Query: 245 tgcatgtgtgtgcacatgcacacatgtgcttgtctcccctgacccctttcattacacttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgcatgtgtgtgcacatgcacacatgtgcttgtctcccctgacccctttcattacacttt 504

                              
Query: 305 ctgaagtgctgaggctgtg 323
           |||||||||||||||||||
Sbjct: 505 ctgaagtgctgaggctgtg 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no302_k21.g1 MSMg01no302_k21.g1 CHROMAT_FILE:
MSMg01no302_k21.g1 PHD_FILE: MSMg01no302_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:22 2005
         (290 letters)



>mm_chr4_99950885_99951574
          Length = 690

 Score =  489 bits (253), Expect = e-143
 Identities = 274/281 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaaggtattgaatacatgaaagctatgaagagcaattaccattgatagtggcagagtct 60
           ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 481 ctaaggtattgaatacatgaaagctgtgaagagcagttaccattgatagtggcagagtct 422

                                                                       
Query: 61  tgcaggtttgagcactagcactctcatgatctgaggacagaaaagaagatataaacagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgcaggtttgagcactagcactctcatgatctgaggacagaaaagaagatataaacagtg 362

                                                                       
Query: 121 gaatagtgtcagaaacagggagaaaaggagcagaaccacacaatgttgatgataatggag 180
           |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 361 gaatagtgtcagaaacagggagaagaggagcaaaaccacacaatgttgatgataatggag 302

                                                                       
Query: 181 atcgcttggggacgtactttgagtatacactaaatacttatatgaaggtgtgatccccag 240
           ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atcacttggggatgtactttgagtatacactaaatacttatatgaaggtgtgatccccag 242

                                                    
Query: 241 atgttggtaagggaaggtgctgtgagattttaagaggggat 281
           |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 241 atgttggtaagggaaggtgctgtgagcttttaagaggggat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)