BAC Information

Click to search

BAC

Clone NameMSMg01-302N03
Chromosome4 (Build37)
Map Location 35,051,368 - 35,051,683
singlet/doubletsinglet
Overlap geneMobkl2b
Upstream geneSpaca1, LOC100039220, LOC665361, LOC665367, 2700059D21Rik, Orc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik, Zfp292, Cga
Downstream geneIfnk, 3110043O21Rik, LOC620559, LOC621227, Lingo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302N03.T7 (MSMg01no302_n03.b1)MSMg01-302N03.TJ (MSMg01no302_n03.g1)
ACCAG428601AG428602
length733736
length of high quality
(start - end)		320 (43 - 362)600 (72 - 671)
definitionCHROMAT_FILE: MSMg01no302_n03.b1 PHD_FILE: MSMg01no302_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:33 2005CHROMAT_FILE: MSMg01no302_n03.g1 PHD_FILE: MSMg01no302_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTGAACTCATCTCCTTCATAGTGCTTATCCAGTTCTTCCATAAACTAT
ATAGTCTACATTTAAGCTGACATCATGTCTTCATGTCTCATACTTCATGC
CACCTACACAGGAATTCTTATGTAGATCGCTAGCTACTCTCTTTCTTTAC
TGATTCCACAGAGCAGATAGACTTCTCTGCATCTGTTTTTCCTCTACAAT
TTATTTCCAGATCAGGGTGCTTTTGAAATCTAAGTGAAATCAGGCCATTG
CCCTCTCCAAAGCCTGAAAGGCTTCCCATGATACTCAGAATAAAAGCCAA
ACTCATCACGTTTTTTCTTGACCCTCCCCCTATAGACCTGACCCCTGACC
CTTCTCCTGCCTCTGGGGTTCTCCCTTCAATGAACTGGTTTGTCTTCACT
GCCCTCTTTAATGTTTCCATAGCACCCGAAATCTATTCTCACTCCAGGTC
TCTGTTAGTGTGCTAGGCAGAGCATCAAAAAGCAACTGGCTTTTAAGATG
GAAATGCATTGTCTTATTTATGGAAATGTGAAACCCATGTGTTGGCAGGA
CCATGCTCTCTGATGGTGCCAGGGAATGTCTGACCTGTGCCTCTCTCCGT
GCTTATGTGGTTTGCTGGCAATTTCCAGTGTTGGCTCATTTGTCCATCTC
TACTCTCACCTTCACCTGGGGTTCTTGTGAGCN

GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAA
GCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAA
AATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAG
TCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCA
ATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGA
CACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCT
GGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGG
TACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTAT
GAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGG
TAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATAAGTGGA
TATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTGCTAAA
CACATGAAACTCAAGAAGAATGAAGACTGAAGTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_n03.b1 MSMg01no302_n03.b1 CHROMAT_FILE:
MSMg01no302_n03.b1 PHD_FILE: MSMg01no302_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:33 2005
         (320 letters)



>mm_chr4_35051164_35051883
          Length = 720

 Score =  603 bits (312), Expect = e-177
 Identities = 315/316 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgaactcatctccttcatagtgcttatccagttcttccataaactatatagtc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgaactcatctccttcatagtgcttatccagttcttccataaactatatagtc 264

                                                                       
Query: 65  tacatttaagctgacatcatgtcttcatgtctcatacttcatgccacctacacaggaatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tacatttaagctgacatcatgtcttcatgtctcatacttcatgccacctacacaggaatt 324

                                                                       
Query: 125 cttatgtagatcgctagctactctctttctttactgattccacagagcagatagacttct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttatgtagatcgctagctactctctttctttactgattccacagagcagatagacttct 384

                                                                       
Query: 185 ctgcatctgtttttcctctacaatttatttccagatcagggtgcttttgaaatctaagtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgcatctgtttttcctctacaatttatttccagatcagggtgcttttgaaatctaagtg 444

                                                                       
Query: 245 aaatcaggccattgccctctccaaagcctgaaaggcttcccatgatactcagaataaaag 304
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 445 aaatcaggccattgccctctccaaagcctgaaaggtttcccatgatactcagaataaaag 504

                           
Query: 305 ccaaactcatcacgtt 320
           ||||||||||||||||
Sbjct: 505 ccaaactcatcacgtt 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |