BAC Information

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BAC

Clone NameMSMg01-303E04
Chromosome4 (Build37)
Map Location 148,616,774 - 148,617,420
singlet/doubletsinglet
Overlap geneKif1b
Upstream genePtchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572, LOC100041733, LOC100041742, LOC100041755, Casz1, Pex14, LOC670864, Dffa, Cort, Apitd1, LOC666774, Pgd
Downstream geneLOC100041794, Ube4b, Rbp7, LOC627985, Nmnat1, Lzic, Ctnnbip1, Clstn1, Pik3cd, D4Ertd429e, Slc25a33, Spsb1, H6pd, Gpr157, Slc2a5, LOC435818, Car6, LOC100041882, Eno1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303E04.T7 (MSMg01no303_e04.b1)MSMg01-303E04.TJ (MSMg01no303_e04.g1)
ACCAG428903AG428904
length734759
length of high quality
(start - end)		651 (40 - 690)167 (70 - 236)
definitionCHROMAT_FILE: MSMg01no303_e04.b1 PHD_FILE: MSMg01no303_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:08 2005CHROMAT_FILE: MSMg01no303_e04.g1 PHD_FILE: MSMg01no303_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AATTTTTATTCTTGTCATTATGTTAAAAATGATAGTATTTGATATGTAAT
AATATCTAAAATAACTTGTGAATGTTTTAATAAAATACTTAGTGAAGACA
GCAATTTCTTCATATTCTCTCAATCTTCATAGGGTACATATTGGTTGAGT
AACACAGAATCATAAAAACACATTTCTATCAGTAGACAGACAGCTAGACT
TCTGGATAGAAAGCAACTTCCTTGTTATGAGGGAGCTGCCCTCACTGTCC
TAGCTTACCTTCAGATACACAGAACAAACGACAACCAGAACATCAATGTC
CCCCTAAAAACCAACACGAAGTGTATCTTAAAGACAACTTACTTTCTTCT
CTTTATAAGTATTCCTTCCTTCCCTCGGGATTGAACCCAGAGCCTCTGTA
AGCTATATAATCTCAGTCCCTGTAACTATAACTCATGCCCTTTTTTGTTT
GTTTTAGATTTGTAGACAGCATCTTGCTATGAACCTATGATCCTCTTGTC
TCAGCCTTGTAGGTAGCTGGATTTCAATTGTGTGACACCATATCAGGCTC
CATCAGTGTCTTTATGTCAAGGCATATAATGATTATCAACGTTTAGTAAT
GAAGAGCACCAGACATTATCACTCTTTAATGCCTACTTATTTACAGTGTG
TTCCCACGGTCAACTAGTACCATTATGACTGGGA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAGGCCAGTCAGGTCTGTGTAGTGAGTTCCA
GGGCAACCCTGTCTTAACCCCTATAAAATAAAGAAAAAGAGCTATGGGGC
TGGCAAGATGGCTCAGCTGATAAAAGCGCTTGTCTCTATGCCCGATGACC
TGAGTTCAGTCCTGGGAACTCCCATGGAAAGAGANAAAAACGNTCACCNC
NNTCACACNNACCCTCCTTTCACCCNNCTCTCCTAAAAACCCAAACAGGT
GGGAGAAGAACCCACCTGGTGCNNNTGTCTCAGCTTCCCTTTGGACATTG
GAAGGTTTAATCCCCCCTTTGGGCCCCCCGAAAAACCCCTTGGCCGGGGA
ACATATTTTTTTTTTTTCTTATCCGGCGGGCTCTTCCTTCCGTTTGTCTC
CCCCCAGGGGGTGAATTCTTCAACCCACCAATTTGGGGCCTCCCCGAGAT
ATAAAACCACCCCCCCCTTGAACTCTCTCCGGTGGGGGCGGGCTCGTGTG
GATTCCCTCCCCCGGGGAGAAAGATTTTTTTTTTACTCTCCTCAGGGCAT
CACCTTTTTTTTTTTTTTCCTCTTTCCCTCTNTTCATTAAAACAATATTT
GGGCGCGCAAAAAAAGACCTTCGTGGGTGTGGTGGGNNNANAAACCATAA
AATACTTGTTTTCTGCCTGCGACCTTGTTTGCTTACCCCATTCTTAACCA
ATAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_e04.b1 MSMg01no303_e04.b1 CHROMAT_FILE:
MSMg01no303_e04.b1 PHD_FILE: MSMg01no303_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:08 2005
         (651 letters)



>mm_chr4_148616570_148617620
          Length = 1051

 Score = 1212 bits (627), Expect = 0.0
 Identities = 643/649 (99%), Gaps = 4/649 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaattttta-t-tcttgtcattatgttaaaaatgatagtatttgatatgtaata 62
           ||||||||||||||| | ||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaatttttaatgtc--gtcattatgttaaaaatgatagtatttgatatgtaata 262

                                                                       
Query: 63  atatctaaaataacttgtgaatgttttaataaaatacttagtgaagacagcaatttcttc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atatctaaaataacttgtgaatgttttaataaaatacttagtgaagacagcaatttcttc 322

                                                                       
Query: 123 atattctctcaatcttcatagggtacatattggttgagtaacacagaatcataaaaacac 182
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 323 atattctctcaatcttcatagggtacatattggttgactaacacagaatcataaaaacac 382

                                                                       
Query: 183 atttctatcagtagacagacagctagacttctggatagaaagcaacttccttgttatgag 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 atttctatcagtagacagacagctagacttctggatagaaagcaacttccttgttatgag 442

                                                                       
Query: 243 ggagctgccctcactgtcctagcttaccttcagatacacagaacaaacgacaaccagaac 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ggagctgccctcactgtcctagcttaccttcagatacacagaacaaacgacaaccagaac 502

                                                                       
Query: 303 atcaatgtccccctaaaaaccaacacgaagtgtatcttaaagacaacttactttcttctc 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 atcaatgtccccctaaaaaccaacacgaagtgtatcttaaagacaacttactttcttctc 562

                                                                       
Query: 363 tttataagtattccttccttccctcgggattgaacccagagcctctgtaagctatataat 422
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tttattagtattccttccttccctcgggattgaacccagagcctctgtaagctatataat 622

                                                                       
Query: 423 ctcagtccctgtaactataactcatgcccttttttgtttgttttagatttgtagacagca 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ctcagtccctgtaactataactcatgcccttttttgtttgttttagatttgtagacagca 682

                                                                       
Query: 483 tcttgctatgaacctatgatcctcttgtctcagccttgtaggtagctggatttcaattgt 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tcttgctatgaacctatgatcctcttgtctcagccttgtaggtagctggatttcaattgt 742

                                                                       
Query: 543 gtgacaccatatcaggctccatcagtgtctttatgtcaaggcatataatgattatcaacg 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gtgacaccatatcaggctccatcagtgtctttatgtcaaggcatataatgattatcaacg 802

                                                            
Query: 603 tttagtaatgaagagcaccagacattatcactctttaatgcctacttat 651
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tttagtaatgaagagcaccagacattatcactctttaatgcctacttat 851


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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