Query= MSMg01no303_h12.b1 MSMg01no303_h12.b1 CHROMAT_FILE:
MSMg01no303_h12.b1 PHD_FILE: MSMg01no303_h12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:23 2005
(689 letters)
>mm_chr4_83501629_83502717
Length = 1089
Score = 1222 bits (632), Expect = 0.0
Identities = 671/686 (97%), Gaps = 8/686 (1%)
Strand = Plus / Plus
Query: 4 ggaattctctcataatcctaagataatattaatttcatgatttttcaaaagaaaaattaa 63
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 212 ggaattctctcataatcctaagataatattgatttcatgatttttcaaaagaaaaattaa 271
Query: 64 gacagaaactttcttttaaaaaatatttaattaacaaattaatttattttaaaaatgtct 123
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 272 gacagaaactttcttttaaaaa-tatttaattaacaaattaatttattttaaaaatgtct 330
Query: 124 atttttatgtgtataggcatattgcctgaatgtatctatctatgtgcactacatgcatgc 183
||||| || ||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 331 atttt-atatgtataggcattttgcctgaatgtatctat----gtgcactacatgcatgc 385
Query: 184 aatgccagtggaagccagaagagggcatcagattctctgggactagtgctacagactgtc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aatgccagtggaagccagaagagggcatcagattctctgggactagtgctacagactgtc 445
Query: 244 tgtcagctaccatctgggtgctgggaatagaacccaggtcctccggaagaacaggcagtg 303
|||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||
Sbjct: 446 -gtcagctaccatctgggtgctgagaatagaacccaggtcctcag-aagaacaggcagtg 503
Query: 304 ttcttaattgctgagccatctcactagcccctcaaatcaacaaactttattgtcaaatat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttcttaattgctgagccatctcactagcccctcaaatcaacaaactttattgtcaaatat 563
Query: 364 tttaacaaaatataatacaaaggtatgttaactgcacctttgattttgaattaagttttg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tttaacaaaatataatacaaaggtatgttaactgcacctttgattttgaattaagttttg 623
Query: 424 gtgatttttgtgttaagaaatctcttatggttgacagagtttctggagcttccatgtgca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gtgatttttgtgttaagaaatctcttatggttgacagagtttctggagcttccatgtgca 683
Query: 484 gttacagggttacagcccacactttaagatgtgagctctagatcaccaagacagaagtgg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gttacagggttacagcccacactttaagatgtgagctctagatcaccaagacagaagtgg 743
Query: 544 cttgaatcccacctagcttttgtcagtcccactagagagtgctgagttctgcattgcata 603
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cttgaatcccaccgagctttcgtcagtcccactagagagtgctgagttctgcattgcata 803
Query: 604 ctaagcatttggaactttccatggtaaccacacactgtcagtgtgggcatgcttccttag 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ctaagcatttggaactttccatggtaaccacacactgtcagtgtgggcatgcttccttag 863
Query: 664 ctaattttctaattagattttttcct 689
||||||||||||||||||||||||||
Sbjct: 864 ctaattttctaattagattttttcct 889
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space: 732641
Effective search space used: 732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no303_h12.g1 MSMg01no303_h12.g1 CHROMAT_FILE:
MSMg01no303_h12.g1 PHD_FILE: MSMg01no303_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:23 2005
(199 letters)
>mm_chr4_83544580_83545178
Length = 599
Score = 362 bits (187), Expect = e-104
Identities = 193/195 (98%)
Strand = Plus / Minus
Query: 1 ttagaggggtctattcaatagacccctgatagacgtctattcaatcccctagctccaagc 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ttagaagggtctattcaatagacccctgatagacgtctattcaatcccctagctccaagc 292
Query: 61 tttttcaaagggtatattttgacattatatcctacagattaatcattcatcatgttgatg 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 291 tttttcaaagggtatattttgacattatatcatacagattaatcattcatcatgttgatg 232
Query: 121 actgctggtttccgcatctcagtagatatgagagggaaggagggaaggaaagagggaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 actgctggtttccgcatctcagtagatatgagagggaaggagggaaggaaagagggaggg 172
Query: 181 aatgagggaatgagg 195
|||||||||||||||
Sbjct: 171 aatgagggaatgagg 157
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 599
Length adjustment: 8
Effective length of query: 191
Effective length of database: 591
Effective search space: 112881
Effective search space used: 112881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
