Query= MSMg01no303_i13.b1 MSMg01no303_i13.b1 CHROMAT_FILE:
MSMg01no303_i13.b1 PHD_FILE: MSMg01no303_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:28 2005
(684 letters)
>mm_chr4_12779469_12780552
Length = 1084
Score = 1268 bits (656), Expect = 0.0
Identities = 674/680 (99%)
Strand = Plus / Minus
Query: 5 gaattcaacattgacacaagccctgaatttatctggacattttaataattaataatcaag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 gaattcaacattgacacaagccctgaatttatctggacattttaataattaataatcaag 825
Query: 65 gaaaacacatgcattatagaaaaaaaagccattcatttttgctttttgttttaaatgtct 124
||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 824 gaaaatacatgcattatagaaaaaatagccactcatttttgctttttgttttaaatgtct 765
Query: 125 aatgggactaatacattttacatgtcaaatattgcccttaataaattctttcaaaacaac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 aatgggactaatacattttacatgtcaaatattgcccttaataaattctttcaaaacaac 705
Query: 185 actattaaaaaacattttggtgcctcatacaagggttttcaaatttgtgtaaaaatgact 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 actattaaaaaacattttggtgcctcatacaagggttttcaaatttgtgtaaaaatgact 645
Query: 245 taattataccaattaaaacttaattatatgattaaagcttaattataccaattttattac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 taattataccaattaaaacttaattatatgattaaagcttaattataccaattttattac 585
Query: 305 tagtgtatataaactcaataaatttgtagacatttttctctccttggaaagatgaaatgt 364
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 584 taatgtatataaactcaataaatttgtagacatttttctctccttggaaagatgaaacgt 525
Query: 365 tatatatagattacattcaaaatatcaaagtcatttctttaaatacattcacttttcaat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tatatatagattacattcaaaatatcaaagtcatttctttaaatacattcacttttcaat 465
Query: 425 ctgatatttgaagcatcactaagccttgaaagatgaggctaaatgaatgttccttgatga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ctgatatttgaagcatcactaagccttgaaagatgaggctaaatgaatgttccttgatga 405
Query: 485 aactgctgaagggttctgccagagtgataaaaccaattcagtgttgcaagaaaaaaaaat 544
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 404 aactgctgaagggttctgccagagtgacaaaaccaattcagtgttgcaagaaaaaaaaat 345
Query: 545 tagacattctttattaaaatgaacagtaactgtaagtccagaagaaagagcatggatttg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tagacattctttattaaaatgaacagtaactgtaagtccagaagaaagagcatggatttg 285
Query: 605 aagtttctaaatctttcaatattgcttttctgaaatctaagttctccaaggaattttgat 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 aagtttctaaatctttcaatattgcttttctgaaatctaagttctccaaggaattttgat 225
Query: 665 tcattttcaggaatccttaa 684
||||||||||||||||||||
Sbjct: 224 tcattttcaggaatccttaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space: 723876
Effective search space used: 723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no303_i13.g1 MSMg01no303_i13.g1 CHROMAT_FILE:
MSMg01no303_i13.g1 PHD_FILE: MSMg01no303_i13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:28 2005
(651 letters)
>mm_chr4_12737305_12738352
Length = 1048
Score = 1183 bits (612), Expect = 0.0
Identities = 640/651 (98%), Gaps = 4/651 (0%)
Strand = Plus / Plus
Query: 1 atgcacctttgatccagctacttgcgcaatatcagaatttattttcttctatttttgaaa 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 atgcacctttgatccagctacttgcgcaatatcagaatttatttccttctatttttgaaa 260
Query: 61 ctgtcataagactacacatagttctggggcactatgtgatttcttggaacgcatacatca 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtcataagactacacgtagttctggggcactatgtgatttcttggaacgcatacatca 320
Query: 121 ctcaatgttaatatcataataagcatccatttcctcaaagatccttttctttgcagtgaa 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcaatgttaatatcataataagcatccatttcctcaaagatccttttctttgcagtgaa 380
Query: 181 aatattaaaaaatacttctaattttttaggggtagggtaattcacagtacctgtgctttg 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 aatattaaaaaatacttctaattttttaggggtaggggaattcacagtacctgtgctttg 440
Query: 241 gggttacctgcatcctgtctatttactgcaggacatgctaaagatgtatcttgaatgaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggttacctgcatcctgtctatttactgcaggacatgctaaagatgtatcttgaatgaga 500
Query: 301 gagctaaattagagttctagggtcaaattctatttatgatgaccctatttatttttccta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagctaaattagagttctagggtcaaattctatttatgatgaccctatttatttttccta 560
Query: 361 ttaatactcatgcttttctggtgtattatagatagaactactattatatttttaacattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaatactcatgcttttctggtgtattatagatagaactactattatatttttaacattt 620
Query: 421 cctgaagcctgttccaaaaatttctctttgtattttatttcacaatttaagatacctgaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctgaagcctgttccaaaaatttctctttgtattttatttcacaatttaagatacctgaa 680
Query: 481 gctacatataaggtgtttgaataaactcctaacacagtcattaaacacaaaagaattagg 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 681 gctacatataaggtgtttgaataaactcctaacacagtcattaaacacaaaagagttagg 740
Query: 541 aaattgctagtactcatttgttgtccagtgaggcttaagagtgaatatttcagatctcca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaattgctagtactcatttgttgtccagtgaggcttaagagtgaatatttcagatctcca 800
Query: 601 tagcagataatattaaccaattacttnaaaattacataaatgacatatttt 651
||||||||| |||||||||||| | ||||||||||||||||||| ||||
Sbjct: 801 tagcagata---ttaaccaattacctaaaaattacataaatgacat-tttt 847
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1048
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1038
Effective search space: 665358
Effective search space used: 665358
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
