GGATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGCATTTCACTTCTGACCTAAATCCACAGCCTTGCTGCTTGTT
TAAAGACAGTATCTACATGTATTTAATTCATTTTACATACAACTTGCTGC
TATCTTTTAAAGATATTTTAAAAATGTCTACTTTTCTCTTTCTTTTTTTA
CATTTACTTATTTATTCTCTCTCTCCCTGCCCCCCACCCCCGGGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTNNNNTTTTTTTTTT
TTTTTTTTTTTTTTTTTTNTTTCCCTTTTTTTTTTTTTTTTNTTTTTTTT
TNTTNNNNNTTTTTTTTCCCCCCCTTTTTTTTTTCCCTTTTCCCTTTTCC
TCCCCCCTTTCTCTCTTTCCTCCCCTCTTTCTCTTCCCTTTCTCTCCCTT
TTTTCCTTCTCTTCCCTCTCTTTTTCCCCCCTTTCTTCCTCCTTTCTCCC
TTCTCTCTCTTTTCTCCCCCTTCCCTTTTCCTTCTCTCTCTTCTTTTTTT
TTTCCCCCTTTCTTTTCCCTTCTTTCTCCCCCCTTTCTCCCCCCCTCCCC
TTTTTTCCCCCCCCCTTTTTTCCCCCTTTTTTTCTTTCCCTCCCCCCCCC
TTCTCTTCCTTTTTTTCTTCCCCCCCCTCTTCTTTTTTTCTCCCCCTTTC
CCCCCCCCTCTTTT

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAGACTCTTGAAGGAAACATG
GAACAACTCAGGGAATCTAAGAGGACAGACACTCTCAGAACTTTAGCTGC
CTACATCTTTTAGGAACTTGGATTCTCATATTGCCAAATAACGGATGGTG
TAAATGAAGTCCATCATAGATCAAGGTTGAAATAAGGAATAGAAAGTTAT
TTGGGGCTTAAAGACAGGTGTGACAGGCGCTAATTCCCTGCAGTACAACC
TAGCATCATCCTGAAATCATTGCAAAGGAAAATGACTTCCGGGAAGAAGA
CAGATGGTGGAGGTGCCGGGAGACTGAAAGGAAGCAATAGAACAAAAGAA
GAGTGTAATGTGGGGGTGCGTAGTCTTAAGCCTAGGACGATGGTAGGTTT
CCTTACAGGGAAATGTTTTTGAACATTTCTGGATTGAAACTCTAAAACAG
ATTTTAGATTAATGGGACTTTAAAGAATTGCTAGAGTGTTCACATCTGTT
AAGGTGAGGTATCTTGGGTGTTGGCACATGGGTTGTAGATAAAGTTGAGA
ATTAATTATGTAGCATTCTTTATGCGTGCAGAATAAAGATTTAAGTCCAG
GGAAGGATTTTGTGGCTTCTCTTTGGGTCTGGGGGAGAGGCATGCATACA
AGCAGCTCAGCGTTGCCTTGCCTGCCTGCTC

Query= MSMg01no303_l06.g1 MSMg01no303_l06.g1 CHROMAT_FILE:
MSMg01no303_l06.g1 PHD_FILE: MSMg01no303_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:41 2005
         (653 letters)



>mm_chr4_131432008_131433060
          Length = 1053

 Score = 1247 bits (645), Expect = 0.0
 Identities = 651/653 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagactcttgaaggaaacatggaacaactcagggaatctaagaggacagacactctcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagactcttgaaggaaacatggaacaactcagggaatctaagaggacagacactctcag 260

                                                                       
Query: 61  aactttagctgcctacatcttttaggaacttggattctcatattgccaaataacggatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactttagctgcctacatcttttaggaacttggattctcatattgccaaataacggatgg 320

                                                                       
Query: 121 tgtaaatgaagtccatcatagatcaaggttgaaataaggaatagaaagttatttggggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtaaatgaagtccatcatagatcaaggttgaaataaggaatagaaagttatttggggct 380

                                                                       
Query: 181 taaagacaggtgtgacaggcgctaattccctgcagtacaacctagcatcatcctgaaatc 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 taaagacaggtgtgacaggcgctaattccatgcagtacaacctagcatcatcctgaaatc 440

                                                                       
Query: 241 attgcaaaggaaaatgacttccgggaagaagacagatggtggaggtgccgggagactgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attgcaaaggaaaatgacttccgggaagaagacagatggtggaggtgccgggagactgaa 500

                                                                       
Query: 301 aggaagcaatagaacaaaagaagagtgtaatgtgggggtgcgtagtcttaagcctaggac 360
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggaagcaatagaacaaaaggagagtgtaatgtgggggtgcgtagtcttaagcctaggac 560

                                                                       
Query: 361 gatggtaggtttccttacagggaaatgtttttgaacatttctggattgaaactctaaaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatggtaggtttccttacagggaaatgtttttgaacatttctggattgaaactctaaaac 620

                                                                       
Query: 421 agattttagattaatgggactttaaagaattgctagagtgttcacatctgttaaggtgag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agattttagattaatgggactttaaagaattgctagagtgttcacatctgttaaggtgag 680

                                                                       
Query: 481 gtatcttgggtgttggcacatgggttgtagataaagttgagaattaattatgtagcattc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtatcttgggtgttggcacatgggttgtagataaagttgagaattaattatgtagcattc 740

                                                                       
Query: 541 tttatgcgtgcagaataaagatttaagtccagggaaggattttgtggcttctctttgggt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttatgcgtgcagaataaagatttaagtccagggaaggattttgtggcttctctttgggt 800

                                                                
Query: 601 ctgggggagaggcatgcatacaagcagctcagcgttgccttgcctgcctgctc 653
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctgggggagaggcatgcatacaagcagctcagcgttgccttgcctgcctgctc 853


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)