TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTGGAATCCTCCCCAAGGTGGAAGGATACAAATAAGCCCACACAGCTG
TCCTCTGACCTCTACACCCATGCTGTGGTGTACACACTCCATTGTATGTA
TCATGCTTGTGGGTGGGATGATAAACATACAATAACAACAATAACAATAA
TGATACACTTAAAAGACCATGTCTTCTTCAATACTCCTTATACTGTTATG
TTATTCTGACATCTTCAGGGCAGAAAAGCCCCTCGTAAACACATCTAGCT
GGTCCTAAGCACTTGGCTAATTATTAATACTGGATTCTAACATGAAAATC
CCATCTCTGAACGTTGTGAAAGGTCATCATTTCCTCCTGCAACCCACCCT
GCCCTCTCCACACACCCATGCCAGGGAAAGAACATGCACTAGAGCCGCTT
ACTTTTCTCCACAAACCTCATTTCTTATCAGACTGTGAAGGGCATTGGTT
CATACGACACAGCTGAGTGACTAAGAGTAATGAATCAGCTCCCTTGCCAT
TGATAATATTTTTGTTTCTTTTCTTTTTATAGGTTCCTAATCAATATCTA
CAACTAACTGCTTTGTACAGGGTAAACCTCCTCCTCTTCCTTATCTACTG
AAATATCTTATCTGGTTTGGTTTTCAATATCTAATAACTTCTTATCCACC
AAAGTCATAATACAGTGTGCACTTGTGATAN

ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCCAGTGCTCAGTTTGTTTTCTAGCACTGGTC
TCTTGTGGACAGAAGCAGAGCATTGAGAGAGCTGACCCAGGGCTGGGCAG
CACAAATGCAAGAGCCAGAGGTATTTTGTAGGGTCATAAAGTAATTCCTT
AAAAATACTTTTAAAATCACAGCCTGTGATGGGAGTGTATCAAAGGAACA
AATGAATCATCTCACAGACCTCTTGCTGGCCAGAGACAGAATAATTTGAG
CACTGAAAGATAATAAGATAATATCGTGTCTAAAGTTGAAGTATCAAGTT
AATAGCCATGAGTCTCTGCTAATGTCAGCACATTTTTTTTAATATTTTCA
GAAATTGAGGAGGGACTATTTTCTTCTGGAGAAGTATTATAAATAATGTT
TGCACTCTGCCCTAAAATGAAAGGATTTTTAAATTGCCTTTTCCCAAGGG
TGAGGTGCTCATGCAGAATTCCAGCTGAGACTACAACGTGGGAAGATAAG
GGGAGGGGGGGGGAAGAGGGACAGTTAGGAGACATGAGAGGTACTCCACC
ACCCAGGTCAGCATCAACAGGGGCAAAGCACACTGCTAGGATGTAAGAGC
AGCTCTCCTTTACACCCCTGTGGTCTTCCTGCTCTAAACCTACAACCCTT
ATGTAATCCTAAAATCCCATCAATATN

Query= MSMg01no303_m24.b1 MSMg01no303_m24.b1 CHROMAT_FILE:
MSMg01no303_m24.b1 PHD_FILE: MSMg01no303_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:49 2005
         (625 letters)



>mm_chr4_84999925_85000949
          Length = 1025

 Score = 1108 bits (573), Expect = 0.0
 Identities = 612/625 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggtggaaggatacaaataagcccacacagctgtcctctgacctctacacccatgctgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 aggtggaaggatacaaataagcccacacagctgtcctctgacctctacacccatgctgtg 836

                                                                       
Query: 61  gtgtacacactccattgtatgtatcatgcttgtgggtgggatgataaacatacaataaca 120
           ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 gtgaacaaactccattgtatgtatcatgcttgtgggtgggatgataaacatacaataaca 776

                                                                       
Query: 121 acaataacaataatgatacacttaaaagaccatgtcttcttcaatactccttatactgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 775 acaataacaataatgatacacttaaaagaccatgtcttcttcaatactctttatactgtt 716

                                                                       
Query: 181 atgttattctgacatcttcagggcagaaaagcccctcgtaaacacatctagctggtccta 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 715 atgttattctgacatcttcagggcagaaaagcccttcgtaaacacatctagctggtccta 656

                                                                       
Query: 241 agcacttggctaattattaatactggattctaacatgaaaatcccatctctgaacgttgt 300
           | ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 655 aacacttggctaattataaatactggattttaacatgaaaatcccatctctgaacgttgt 596

                                                                       
Query: 301 gaaaggtcatcatttcctcctgcaacccaccctgccctctccacacacccatgccaggga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 595 gaaaggtcatcatttcctcctgcaacccaccctgccctctccacacacccacgtcaggga 536

                                                                       
Query: 361 aagaacatgcactagagccgcttacttttctccacaaacctcatttcttatcagactgtg 420
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 aagaacatgcgctagagccgcttacttttctccacaaacctcatttcttatcagactgtg 476

                                                                       
Query: 421 aagggcattggttcatacgacacagctgagtgactaagagtaatgaatcagctcccttgc 480
           ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 aagggcattggctcatacaacacagctgagtgactaagagtaatgaatcagctcccttgc 416

                                                                       
Query: 481 cattgataatatttttgtttcttttctttttataggttcctaatcaatatctacaactaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 cattgataatatttttgtttcttttctttttataggttcctaatcaatatctacaactaa 356

                                                                       
Query: 541 ctgctttgtacagggtaaacctcctcctcttccttatctactgaaatatcttatctggtt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ctgctttgtacagggtaaacctcctcctcttccttatctactgaaatatcttatctggtt 296

                                    
Query: 601 tggttttcaatatctaataacttct 625
           ||||||||||||| |||||||||||
Sbjct: 295 tggttttcaatatttaataacttct 271


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)