BAC Information

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BAC

Clone NameMSMg01-303O22
Chromosome4 (Build37)
Map Location 29,586,170 - 29,586,461
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha7, LOC100040907, LOC100040811
Downstream geneLOC665185
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303O22.T7 (MSMg01no303_o22.b1)MSMg01-303O22.TJ (MSMg01no303_o22.g1)
ACCAG429376AG429377
length736737
length of high quality
(start - end)
79 (237 - 315)292 (69 - 360)
definitionCHROMAT_FILE: MSMg01no303_o22.b1 PHD_FILE: MSMg01no303_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:58 2005CHROMAT_FILE: MSMg01no303_o22.g1 PHD_FILE: MSMg01no303_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCCGAGCCGCCGGAANNCCA
NGAAGNCATAGCGNNCACGCGGCGGAANAGNAGNCNNCNGNGNAAAGGNA
CCACANNNNCNANATTTACCCCCCAGAAGAGGGAAANCNGGGNACNANNC
AGCNNCGGGCNANNANAAANAAGGCGGCNANGAACANAGNGGAGCAGGNA
NCCNNACCAAACAGAGGAACACCNNCGGGGNANANGCCCAGGAACAGCAT
TTTTTAGTTCTCAGGTATTACTATGTCCAATTTTCTGCAAAACTGCCAGA
CTGATTTCCAGAGNGTTTTTATCTTTTTGCAANCCCAACAGCAAAGCAGG
AGCGGCCCTCTTTTCCCCACCCACACCAACAAACCNCACCNCANAAACNG
ANACCACCAGAGCCACCGACCAAAACAGACAAGAGAGAGGCGGAACCCCA
GGGACGCNCCGACNAGCAACCCCCAGAAGACNAAGGANGACCCACACCCC
CACAGGAAACCCAAGCCCAAAAGAGNAGACGCACGCGAGAAACCCCAGCC
ACACACCGCCCCCCAAGACAAACAGGCCCAAACGGACCACAACACACCAA
AAACAAGAGGCCACCGACACAAAAGGACCCCAACCCCACCCCCGGACGCA
ACATTTTTTTTTTTTTCTTTCCCCAACTGTCGTTCGATCACTTCGGTCTA
TTGACAGCGTCCTTCTGTCCCTACCAATCCATTGCC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGGGAAAGAGTCAAGCATGGGAGATTCGCCAC
CCAGACTCTGAAGAAGTTGGACTTATGAAATTGAGGCACATAGAATAGGT
TAAGTGGGTTAAATAAGTTACAAGATAGTCAGTGAACACGCCTAGCAAAA
GGGCATAAGCACTGACAGTAAATAATAAGCCTCTGAGTTATTATTTGAGA
ATGGAGGCACAGTAAGAAAAGCCAATGGCTACACTAAAACATTGTTTAAT
TGAATTCTTTACCATCACTGTCTCCTTTCTGCCTCCTCTCCAGTGTAGAT
TCCTGAGCACTGTTGTGAAGGGCTGGATGAGACATCACATTAGGACTCAG
TCCTCCAACATCTCTCACTCTCTGTTCATTGTCCATTGTGAATGACTTTG
CTAAATCCCATCTACTGCAAGAAGCTTTCTGAAGAGAGCTGAATGGGGCA
GTAAATATGGGTGTACCAGTATGCCATTGGGTGTCATTTTACTACTGTGC
TCCTTTCACAGAATAATAATAGGATTCTCCCTAAAGATTCAATGCAATCC
TCATCACCTAAGTCAACAACCAAAGAGCATACCAGGGCTGGTGTAGCAGA
GTTCTGCCTTGTCTGCCCTCAGTGGGAGAGGTTGAGGCTAATCCTGCAGA
TATTTGGTACACCAGGGTGGATGGATACCCAGAGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_o22.g1 MSMg01no303_o22.g1 CHROMAT_FILE:
MSMg01no303_o22.g1 PHD_FILE: MSMg01no303_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:58 2005
         (292 letters)



>mm_chr4_29585970_29586661
          Length = 692

 Score =  565 bits (292), Expect = e-165
 Identities = 292/292 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggaaagagtcaagcatgggagattcgccacccagactctgaagaagttggacttatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggaaagagtcaagcatgggagattcgccacccagactctgaagaagttggacttatga 260

                                                                       
Query: 61  aattgaggcacatagaataggttaagtgggttaaataagttacaagatagtcagtgaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattgaggcacatagaataggttaagtgggttaaataagttacaagatagtcagtgaaca 320

                                                                       
Query: 121 cgcctagcaaaagggcataagcactgacagtaaataataagcctctgagttattatttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgcctagcaaaagggcataagcactgacagtaaataataagcctctgagttattatttga 380

                                                                       
Query: 181 gaatggaggcacagtaagaaaagccaatggctacactaaaacattgtttaattgaattct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaatggaggcacagtaagaaaagccaatggctacactaaaacattgtttaattgaattct 440

                                                               
Query: 241 ttaccatcactgtctcctttctgcctcctctccagtgtagattcctgagcac 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaccatcactgtctcctttctgcctcctctccagtgtagattcctgagcac 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)