Query= MSMg01no304_c09.b1 MSMg01no304_c09.b1 CHROMAT_FILE:
MSMg01no304_c09.b1 PHD_FILE: MSMg01no304_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:23 2005
(685 letters)
>mm_chr4_63160270_63161354
Length = 1085
Score = 1236 bits (639), Expect = 0.0
Identities = 675/687 (98%), Gaps = 4/687 (0%)
Strand = Plus / Plus
Query: 1 tttgaatgcaagctacacgtttcatgtcctatgcctcacatgaagcatgtgacacacagg 60
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 201 tttgaatgcaagctacacgtttcatgccctatgcgtcacatgaagcatgtgacacacagg 260
Query: 61 aggacaggacattactggtgacttccttctccctctttttattgcattctttaaaagccc 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 aggacaggacattactggtgacttccttctccctctttttattgcaatctttaaaagccc 320
Query: 121 ttttccattcattccatagttatttggagcctctctccttccctctaattcagc-gaaat 179
|||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||
Sbjct: 321 ttttccattcattccatagttattcggagcctctctccttccctctaattca-ctgaaat 379
Query: 180 gtctcctcagaaggtgatagagattaatttaacttgagatgcatttcccatgggacatat 239
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 380 gtctcctcagaaggtgatagagattaatttaacttgagatgcatttcccgtgggacatat 439
Query: 240 cgaattatctgtagctggtggttttttttttttt-gaacagctctgttttaagcaattat 298
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 440 agaattatctgtagctggtggttttttttttttttgaacagctctgttttaagcaattat 499
Query: 299 atgttttattcactcactcctaccagcaagtacaagagatttcatcaccactgtcgtcct 358
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 500 atgttttattcactcactcctaccagcaagtacaagagattccatcaccactgtcgtcct 559
Query: 359 cttcctggtagaacagagaggatgtagagatgccaggaggcaactatcctgaggatgaga 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cttcctggtagaacagagaggatgtagagatgccaggaggcaactatcctgaggatgaga 619
Query: 419 gggatacccacatggagagttgggcttttgtaccaggagagtctcattccagagctttga 478
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 620 gggatacccacatggagagttgggcttttggaccaggagagtctcattccagag-tttga 678
Query: 479 ttatcaatctctgtagtgtagagtctcccagatgtgtggttcagagatgtcaagttgggc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ttatcaatctctgtagtgtagagtctcccagatgtgtggttcagagatgtcaagttgggc 738
Query: 539 catccttcctgctgggatcagtcaaggaccacatttcttccacgaatgtgaatattttct 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 catccttcctgctgggatcagtcaaggaccacatttcttccacgaatgtgaatattttct 798
Query: 599 ttagagaatttgagatgagaactcacaggttaataactcacagtccctgactggtaagct 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ttagagaatttgagatgagaactcacaggttaataactcacagtccctgactggtaagct 858
Query: 659 gacagtttgtgctataaagacagagta 685
|||||||||||||||||||||||||||
Sbjct: 859 gacagtttgtgctataaagacagagta 885
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space: 725625
Effective search space used: 725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no304_c09.g1 MSMg01no304_c09.g1 CHROMAT_FILE:
MSMg01no304_c09.g1 PHD_FILE: MSMg01no304_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:24 2005
(756 letters)
>mm_chr4_63227673_63228828
Length = 1156
Score = 1230 bits (636), Expect = 0.0
Identities = 677/708 (95%), Gaps = 28/708 (3%)
Strand = Plus / Minus
Query: 5 ggaacacctcagtgaactggggccaaagcggctggcctaagatgtgaacctgatggccca 64
|||||||||||||||||||||||||||| |||||| |||
Sbjct: 686 ggaacacctcagtgaactggggccaaaggggctgg----------------------cca 649
Query: 65 agttcattcctcagaatccagaagaaggtagagggaaagatcagactccacaaagttgtc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 agttcattcctcagaatccagaagaaggtagagggaaagatcagactccacaaagttgtc 589
Query: 125 ttctgccttccgtacatgaatcctgg------cacacacacacacacacacacacacaca 178
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 588 ttctgccttccgtacatgaatcctggcacacacacacacacacacacacacacacacaca 529
Query: 179 cacacacacaccaacatatacatgagaataatcatcatcataagtacgattcccccaaag 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 cacacacacaccaacatatacatgagaataatcatcatcataagtacgattcccccaaag 469
Query: 239 cagaaaaatcctctaagaacatataacaatagacacacaagctcttcactaatcaagaca 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 cagaaaaatcctctaagaacatataacaatagacacacaagctcttcactaatcaagaca 409
Query: 299 ataatctaagaaagctgtggggtttcaggagatagttcagtgtgtggatctgctgcccaa 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ataatctaagaaagctgtggggtttcaggagatagttcagtgtgtggatctgctgcccaa 349
Query: 359 gcatgaggacagaagtttggattgctagcagctgtgttagcttggtgctttggggaaatg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gcatgaggacagaagtttggattgctagcagctgtgttagcttggtgctttggggaaatg 289
Query: 419 cctggcagccaatgtaggtagaccagcaagctccatgttcagtgatagaccctgttgtca 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 cctggcagccaatgtaggtagaccagcaagctccatgttcagtgatagaccctgttgtca 229
Query: 479 ataagcaagctggagaacaaaccagcaagacatcaacctccacatgcacaggcatgcaag 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 ataagcaagctggagaacaaaccagcaagacatcaacctccacatgcacaggcatgcaag 169
Query: 539 tataaatacatacacatgcacacgccacacgagaaaggacgggaagaaagagagcaggga 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 tataaatacatacacatgcacacgccacacgagaaaggacgggaagaaagagagcaggga 109
Query: 599 gagagagaagggaagaggaggtggagcacagccagcttgtctggagcacggcgctcagtg 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 gagagagaagggaagaggaggtggagcacagccagcttgtctggagcacggcgctcagtg 49
Query: 659 ctgtctgcaaagtcttctttcaaaagcagcatgttaaactcggagagc 706
||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 48 ctgtctgcaaagtcttctttcaatagcagcgtgttaaactcggagagc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 756
Length of database: 1156
Length adjustment: 10
Effective length of query: 746
Effective length of database: 1146
Effective search space: 854916
Effective search space used: 854916
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
