Query= MSMg01no304_h15.b1 MSMg01no304_h15.b1 CHROMAT_FILE:
MSMg01no304_h15.b1 PHD_FILE: MSMg01no304_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:10 2005
(660 letters)
>mm_chr4_152529010_152530069
Length = 1060
Score = 1145 bits (592), Expect = 0.0
Identities = 643/660 (97%)
Strand = Plus / Minus
Query: 1 tcatcttcatgttgatctgcaggaaatttgccctgaagtccttaggttatgtaatagtgg 60
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 895 tcatcttcatgttgatctgcaggaaatttgcccaggagtccttaggttatgtaatagtgg 836
Query: 61 caggaaaggcatatcagcaacacgaatcagtcctgagatgaaatctctgaaggcctcaaa 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 835 caggaaaggcatatcagcaacacgaatcagtcctgagatgagatctctgaaggcctcaaa 776
Query: 121 attcagaatttacctattgcagccacataacacacagtggaccatctgttacatgcatac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 attcagaatttacctattgcagccacataacacacagtggaccatctgttacatgcatac 716
Query: 181 ctttagcctttttctagattttcctgacatgatgggaacctgctgggtagtatcactggc 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 715 ctttagcctttttctagattttcctgacatgatgggaacctgctgtgtagtatcactggc 656
Query: 241 gtgtagagctccttgccccagttctcaactctggagcgtggtgcctccatgtctctatgc 300
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 655 gtgtagagctccttgccccagttcccaactctggagtatggtgcctccatgtctctatgc 596
Query: 301 tcaccaacctggggctgtgcatttcctggcctgtaggggttgtatagagattgcattcta 360
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct: 595 tcaccaacctggggctgtgcaaaccctggcctgtaggggttgtatagagatttcattcta 536
Query: 361 tggccctgaggggttaagtagctgttgctgtgatagaactcagtttacagactttctcca 420
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 535 tggccctgaggggttaagtagctgttaatgtgatagaactcagtttacagactttctcca 476
Query: 421 gggctggaagtcagggcatgggaaagctcgagatgcctaactctgcagcttcccagtggc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gggctggaagtcagggcatgggaaagctcgagatgcctaactctgcagcttcccagtggc 416
Query: 481 ttctcaggaggcaaactgttctcgccagggttactattgctgtgatgaataccacggctg 540
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 415 ttctcaggaggcaaactgttcttgccagggttactattgctgtgatgaacaccacggctg 356
Query: 541 aaagcaagttgaggagaaaagtttatttggcttgcatagccagatttgaagtccattgag 600
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 355 aaagcaagttgaggagaaaagtttatttggcttacatagccagatttgaagtccattgag 296
Query: 601 aagagccaaaataaggactcgaactagacaggaacctggaggcaggaactgatgcggagg 660
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 aagagccaaaataaggattcgaactagacaggaacctggaggcaggaactgatgcggagg 236
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no304_h15.g1 MSMg01no304_h15.g1 CHROMAT_FILE:
MSMg01no304_h15.g1 PHD_FILE: MSMg01no304_h15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:10 2005
(697 letters)
>mm_chr4_152366264_152367360
Length = 1097
Score = 1185 bits (613), Expect = 0.0
Identities = 667/697 (95%), Gaps = 22/697 (3%)
Strand = Plus / Plus
Query: 1 gagataggagacagagacaggagaatactttggaagcttgtggagcagccatgttaaagt 60
|||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 223 gagataggaggcagagacaggagaatagtctggaagcttgtggagcagccatgttaaagt 282
Query: 61 aaagtaaagtaaagtaaagcccagcaaaaccactagacagcaaggtataaggtataagga 120
| | ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 a---t---gta-------gcccagcaaaaccactagacagcaaggtataaggtataagga 329
Query: 121 gagaattgattctctcaagttgtcatttggcatctacaggcatgctgtggcaagcacgtg 180
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 330 gagaattgactctctcaagttgtcatttggcatctacaggcatgctgtggctagcacgtg 389
Query: 181 tgctcacactatacatacacacacacaagtaatttttataacagagcatgggtattcatg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tgctcacactatacatacacacacacaagtaatttttataacagagcatgggtattcat- 448
Query: 241 gcctacatacactcatctctctggtgactgttctttcttgctcctgggggattcccctcg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 --------acactcatctctctggtgactgttctttcttgctcctgggggattcccctcg 500
Query: 301 cttcctagattcttttaattagttgctttatgcatctgtgggggaattaacttctgttga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttcctagattcttttaattagttgctttatgcatctgtgggggaattaacttctgttga 560
Query: 361 gaaattcagagcctccaaaggaaaccgctgactttgaataagagctttcctttgccaggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaattcagagcctccaaaggaaaccgctgactttgaataagagctttcctttgccaggc 620
Query: 421 accttccccagccagggaggtcatgcctagtagcacccacccaccctaatactactgggc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 accttccccagccagggaggtcatgcctagtagcacccacccaccctaatactactgggc 680
Query: 481 agaggagggcagtgctgggggcttcctgggtgcaatcatctggatgctggcaggtttagg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaggagggcagtgctgggggcttcctgggtgcaatcatctggatgctggcaggtttagg 740
Query: 541 atctctcattagcccattccaagtctagtttcccagcaagctggataggacaaagaacac 600
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 741 atctcccattagcccattccaagtctagtttcccagcaagcaggataggacaaagaacac 800
Query: 601 aggaacctgagagtatcctggtttctaggcctggggtagcggggtagggacaccccagaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aggaacctgagagtatcctggtttctaggcctggggtagcggggtagggacaccccagaa 860
Query: 661 ctgtccatgagtcttacctttgtgttctcctgatgct 697
|||||||||||||||||||||||||||||| ||||||
Sbjct: 861 ctgtccatgagtcttacctttgtgttctcccgatgct 897
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1097
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1087
Effective search space: 746769
Effective search space used: 746769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
