BAC Information

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BAC

Clone NameMSMg01-304I06
Chromosome4 (Build37)
Map Location 140,619,975 - 140,620,689
singlet/doubletsinglet
Overlap genenone
Upstream geneIgsf21, LOC100040728, Arhgef10l, Rcc2, Padi6, Padi4, Padi3, Padi1, Padi2, Sdhb, Atp13a2, Mfap2, Crocc
Downstream geneNecap2, LOC638991, Spata21, D4Ertd22e, Fbxo42, 6330545A04Rik, Arhgef19, Epha2, Gm693, Clcnka, Clcnkb, Hspb7, Gm694, Zbtb17, Spen, LOC100042951, B330016D10Rik, Fblim1, BC025833, Slc25a34, Plekhm2, Ddi2, Agmat, Dnajc16, Casp9, Ela2a, Ctrc, Efhd2, Fhad1, Tmem51
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304I06.T7 (MSMg01no304_i06.b1)MSMg01-304I06.TJ (MSMg01no304_i06.g1)
ACCAG429772AG429773
length1,2931,384
length of high quality
(start - end)
---720 (83 - 802)
definitionCHROMAT_FILE: MSMg01no304_i06.b1 PHD_FILE: MSMg01no304_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:15 2005CHROMAT_FILE: MSMg01no304_i06.g1 PHD_FILE: MSMg01no304_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCGGGCCCGNNNNNNNNCCTTTGGGCGCTATXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCATTTCCGCTCCTAATCTCTTTTAAGGCCCTGCGCT
GGNTCCCCCCCCCCCCCCCCCCCCCTTTAAGCTCCCTTAGNNGAAGAGNN
GGANAGGGNGGGGNCCNAAGGAGGACNNACCGGGCCNGGGGGGGNCCAGG
GCCCGGGACAGAAGGCAAAACGGGAGGGGCCCGCCNNGCCGCCGCAGNCA
CCCGGGGCNGGGGGGGCACGGCCCCCCGGGGGGGGGCCCGGGGAGGCCCC
GAGCCAGGCGCCGGCANCGGCCCCGGCAGCCCGACCGGGGGGCGGCCCGC
NNCACGGGGGGAGGNAANCCCCAGGGGCCGACCCCCGCCGGNNGAGGGGC
GGGGCACCCCCAGTTTTTTTTCNGGGGNNCCCCGAGNGGGGAGAGGGAGA
GGCAAGGAAACCCCCCCGACGTCCCGCGGCCCGGAGAGAAGGCNCAACGG
NNAAGAGCACAGACGGCNCNNCCCAAAGGNCCCGAGANAAAAACCCAGCA
ACCACAGGGGGGGACACGACCAACCGGCAAGAGAGCCGACGCCCCCCNCC
GGGGNGNCGGAAGACAGCCACGGGGGACNCANACACGAGAAGAAAGAAAG
CCCNAGAAAAAAAAAAAGACGCCCCGAGAAGAGCNNACCCCCGACGCCCC
AAGGAGAGCCCCAAAAGGCAGAGCCCCCCACGCCCACCCCCCCAGGACAA
GGGGAAAAAAAAGCGNGNGGGGCCAGCGGACGGACAGCGCCCAACGGGTT
GGCGCCGGGGGAGGGGGCAGGGACCCCGCCGGGAAGGGGCACCGGACGCA
AGAGGAGCGCGGGGGACCCAGAGGGAAGGGGCGGGCAGGGCACCAGGGGG
GGCGCGGGACCGGAAACGGCCCCCCGGGAAGAAGGCCGAGGGACGCGCCC
GCGGGACGAACCCCCCGCGCGGGGGGGGGCGGCGCAACAGGCCCGCNAAG
GAAAGAGGAGGAGGCCGGGAGGGCAGAGAGCGCGCGGACGGGACCCGCAC
GAGGCNGACGCACCCGGCACACGCGCAACGAGCCCAAACGAGCCGGGCGC
GAGCAACGAGGGGGCACGCGCCAGGGCCGACAGCGGGACGCCAGAGCCGG
CGAGGACGGCGACAACAGAGCGCGGCGCGCGCCGCAAGGCGCCCGCGCCA
GAGAGCCCCAAGACCCGACCGGGCCCAGAGCGCCCCGGCCCGCCCACACC
GGACCGGCNGCGCCAGCCGACGGAGGAGAGGGCGGGCAGCAGA
NNNCCAGGTTAGTTNNNNNACATGTGAXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTAAAACAGCCAAGGC
TACACAGAGAAACCCTGTCTCGACCATAAAAAAAAAATTGAAAAAAAAAT
TGAAAAAACTTAAAGTTACGACAAGATCTCTGGTAGCATTGGCTGACCTA
GAGTCCCTGTGTATCTCAGAATGGCCTCAAGCTTCAGTGGTTCTCCTGTC
TCTTTGCCTTCCGAGTGAGTGCTAGAATTAGAAGTGGGTGTTGCACCTGC
CACTCTTAAGTGCCCATGTGGCCTAGGCTTAGTTCCCAGATCCTTACAGA
GCTGAAAATGCCTGGCTTTCTGATCCTGTCTCTGCCTCCCAGATGCTAGG
ATTACAGGCTGGGCCACTGTGGCAGTTTTACCTTCTGAGGATCAAACCCA
GGGCTTTATGCATGACAAAAGCTGAACCACACGCCTCTTCTGCCTGCCTC
TTTTGTAGTGATGTAGCTAGAACCCCAGACCTCAAATCCTATCAAGCTAG
AACCCCAGTCCAGAGACAAACGATCACTGCCTCACTTTGTCAGGTCAGTG
CAGGCCCAGCTTTCTGGACCCTCTGTAAGGTTACAGTGTTGGCCAGGCCT
GGAACCTCTCTTCAAAGTTTAACTAGGAAGGCTCAAGTTCAGTGGCTGTC
AGCACCCAGAGTCTTACAGGATGCTGCTGCTGGACCATGCTTGGATTCTC
CCTGGCTGTCATTGGCCAGTTCTGGCCACAAGACTCTGAAACATTCTTCT
TTAAGGTCAACAAAAGAATTTAAAATTTCTCAAGGAGGTTACCAAAAAAA
CCTCGTATATGTGTTATATATATATGCGCGTGTGTGATATGTATAATACA
TGTGTGATATATGTGTACATATAAAACACCTATATGTCTTATACACACCC
ATACCTACCTCCGTGTGGGGGGCCGTGTGGGGGGGAACTCCACCCCGTAA
CCCTGGCTGGGTTGGAAAAATAATAAAAAGGTTGGCCTCCGGGCTCTGGG
TTCCCAGGGTTTTGCCCCCGCCCCCCGGGGCCCCATGGAAAAGGGAATCT
CTCACCCCAAAGACGAAAACTGTGACACCGTCCTAAGGGGGAATCACAAT
TCCCCCCTCCCCAAAACCAAGGGGGGGGCTCGGGTAATCCCAAAACTTCT
CCCGTCCCCCCAGGGTCTCCCTTGTGGTTGATTTAGCCCCACCCCCAGAA
ATTTTCCAACATAGAGGCATGTTTCCTCTCATAAAACCTATTCTATTCTT
TGTCGCTTACCCTTGTCTCCCGTATTTTTACATCTAAGATACCAAAGTGC
TCCCTCCCTCCACTNTTTATCATCNCAATAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_i06.g1 MSMg01no304_i06.g1 CHROMAT_FILE:
MSMg01no304_i06.g1 PHD_FILE: MSMg01no304_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:16 2005
         (720 letters)



>mm_chr4_140619770_140620889
          Length = 1120

 Score = 1348 bits (697), Expect = 0.0
 Identities = 710/717 (99%), Gaps = 6/717 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   acagccaaggctacacagagaaaccctgtctcgaccataaaaaaaaaa----ttgaaaaa 63
           ||||||||||||||||||||||||||||||||||  | ||||||||||    ||||||||
Sbjct: 206 acagccaaggctacacagagaaaccctgtctcga--aaaaaaaaaaaaaaaattgaaaaa 263

                                                                       
Query: 64  aaaattgaaaaaacttaaagttacgacaagatctctggtagcattggctgacctagagtc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaaattgaaaaaacttaaagttacgacaagatctctggtagcattggctgacctagagtc 323

                                                                       
Query: 124 cctgtgtatctcagaatggcctcaagcttcagtggttctcctgtctctttgccttccgag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cctgtgtatctcagaatggcctcaagcttcagtggttctcctgtctctttgccttccgag 383

                                                                       
Query: 184 tgagtgctagaattagaagtgggtgttgcacctgccactcttaagtgcccatgtggccta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgagtgctagaattagaagtgggtgttgcacctgccactcttaagtgcccatgtggccta 443

                                                                       
Query: 244 ggcttagttcccagatccttacagagctgaaaatgcctggctttctgatcctgtctctgc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggcttagttcccagatccttacagagctgaaaatgcctggctttctgatcctgtctctgc 503

                                                                       
Query: 304 ctcccagatgctaggattacaggctgggccactgtggcagttttaccttctgaggatcaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctcccagatgctaggattacaggctgggccactgtggcagttttaccttctgaggatcaa 563

                                                                       
Query: 364 acccagggctttatgcatgacaaaagctgaaccacacgcctcttctgcctgcctcttttg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 acccagggctttatgcatgacaaaagctgaaccacacgcctcttctgcctgcctcttttg 623

                                                                       
Query: 424 tagtgatgtagctagaaccccagacctcaaatcctatcaagctagaaccccagtccagag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tagtgatgtagctagaaccccagacctcaaatcctatcaagctagaaccccagtccagag 683

                                                                       
Query: 484 acaaacgatcactgcctcactttgtcaggtcagtgcaggcccagctttctggaccctctg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 acaaacgatcactgcctcactttgtcaggtcagtgcaggcccagctttctggaccctctg 743

                                                                       
Query: 544 taaggttacagtgttggccaggcctggaacctctcttcaaagtttaactaggaaggctca 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 taaggttacagtgttggccaggcctggaacctctcttcaaagtttaactaggaaggctca 803

                                                                       
Query: 604 agttcagtggctgtcagcacccagagtcttacaggatgctgctgctggaccatgcttgga 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 agttcagtggctgtcagcacccagagtcttacaggatgctgctgctggaccatgcttgga 863

                                                                    
Query: 664 ttctccctggctgtcattggccagttctggccacaagactctgaaacattcttcttt 720
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 ttctccctggctgtcattggccagttctggccacaagactctgaaacattcttcttt 920


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 720
Length of database: 1120
Length adjustment: 10
Effective length of query: 710
Effective length of database: 1110
Effective search space:   788100
Effective search space used:   788100
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)