Query= MSMg01no304_j24.b1 MSMg01no304_j24.b1 CHROMAT_FILE:
MSMg01no304_j24.b1 PHD_FILE: MSMg01no304_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:31 2005
(763 letters)
>mm_chr4_109764573_109765735
Length = 1163
Score = 961 bits (497), Expect = 0.0
Identities = 527/537 (98%)
Strand = Plus / Minus
Query: 1 ggaaagactgggtgagagcgcagaagggcagaccagcttgagcagacgtgtggaggaggg 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 537 ggaaagactgggtgagagcgcagaaggggagaccagcttgagcagacgtgtggaggaggg 478
Query: 61 acaggtgcatgctgcaaaggatccctgtgtggttagagtgggagagggctcagacacagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 acaggtgcatgctgcaaaggatccctgtgtggttagagtgggagagggctcagacacagg 418
Query: 121 agatgagcccagagacagaactgggagtcaacatcaaaactaagctaacaaatcaggaaa 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 417 agatgagcccagagacagaactgggagccaacatcaaaactaagctaacaaatcaggaaa 358
Query: 181 tttccttcaagactaggatgtccccaaagggtttcaatagagctcagtttggtcaaacgt 240
||||||||||||||||| |||||| |||| |||| |||||||||||||||||||||| |
Sbjct: 357 tttccttcaagactagggcgtccccgaaggttttccatagagctcagtttggtcaaacct 298
Query: 241 gtgtcttaacccttagaaaatgacagactcataacacatagtagacaggaaggaaaggtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gtgtcttaacccttagaaaatgacagactcataacacatagtagacaggaaggaaaggtc 238
Query: 301 tgaaaatgaatgcaaagcatgcagccagtccccttccatttgttgaaagcacagatttct 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 237 tgaaaatgaatgcaaagcatgaagccagtccccttccatttgttgaaagcacagatttct 178
Query: 361 gggcccctttctgggcacaattaatgaaaatctctgcagtaaggcatggcagtctgcttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 gggcccctttctgggcacaattaatgaaaatctctgcagtaaggcatggcagtctgcttt 118
Query: 421 agttttagaatgctggttttcatgttttacagtttggttgggttgagttttgatttgttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 agttttagaatgctggttttcatgttttacagtttggttgggttgagttttgatttgttt 58
Query: 481 gctgttatttgagatcatcgattttaatctcttcattttccacaagggaaaattgag 537
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 57 gctgttatttgagatcattgattttaatctcttcattttccacaagggaaaattgag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 763
Length of database: 1163
Length adjustment: 10
Effective length of query: 753
Effective length of database: 1153
Effective search space: 868209
Effective search space used: 868209
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no304_j24.g1 MSMg01no304_j24.g1 CHROMAT_FILE:
MSMg01no304_j24.g1 PHD_FILE: MSMg01no304_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:31 2005
(756 letters)
>mm_chr4_109714547_109715702
Length = 1156
Score = 1402 bits (725), Expect = 0.0
Identities = 749/757 (98%), Gaps = 1/757 (0%)
Strand = Plus / Plus
Query: 1 tgaataaaccctttccaccccaagtgcttcttggtcatgatgtttgtgcaggaatagaaa 60
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 200 tgaataaaccctttccactccaagtgcttcttggtcatgatgtttgttcaggaatagaaa 259
Query: 61 ccctgactaagacagcgaccttctacctgcctttatgaggttatgccagtgccttgcaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ccctgactaagacagcgaccttctacctgcctttatgaggttatgccagtgccttgcaag 319
Query: 121 tacagaagtggatgttcacagtcatctataagatggaacacagggcccccagtggagatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tacagaagtggatgttcacagtcatctataagatggaacacagggcccccagtggagatg 379
Query: 181 ctagagaaagcacccaaggagctgaaggggtctgcaaccctataggtggaacaacaatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctagagaaagcacccaaggagctgaaggggtctgcaaccctataggtggaacaacaatat 439
Query: 241 gaactaaccagtacccccagagctcgtgtctctagctgcatatgtagcagaagatggcct 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggactaaccagtacccccagagctcgtgtctctagctgcatatgtagcagaagatggcct 499
Query: 301 agtcgggcctagggaactttcgggatagcatttgaatgtatataaagaaaatatctaatt 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agttgggcctagggaactttcgggatagcatttgaatgtatataaagaaaatatctaatt 559
Query: 361 aaaaaaaaa-gaaagtgatttccttctggtctactgactacaggctggtactggaccctg 419
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aaaaaaaaaagaaagtgatttccttctggtctactgactacaggctggtactggaccctg 619
Query: 420 gatatttacccatgcaagtctgcacagctggagaggtgactggcagtgttggaggaaact 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gatatttacccatgcaagtctgcacagctggagaggtgactggcagtgttggaggaaact 679
Query: 480 gagtagacatgcttggccttgttagggtcattgctgtgatgaaacaccatgaccaaagcc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gagtagacatgcttggccttgttagggtcattgctgtgatgaaacaccatgaccaaagcc 739
Query: 540 acttgggggaggaaagggtttatttggcatatgcttccaaatcattgttcattgtggaag 599
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 acttgggggagaaaagggtttatttggcatatgcttccaaatcattgttcattgtggaag 799
Query: 600 gaagttggggcaagaacttaaacaggccaggaacctggatgcaggaactgatacagaggt 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 gaagttggggcaagaacttaaacaggccaggaacctggatgcaggaactgatacagaggt 859
Query: 660 catggaggctgtcgcttactaggcttgcttccaaaggcttgctcagcctgctttcttaga 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 catggaggctgtcgcttactaggcttgcttccaaaggcttgctcagcctgctttcttaga 919
Query: 720 gaacccaggaccatcagtccagggacagccccaccca 756
|||||||| ||||||||||||||||| ||||||||||
Sbjct: 920 gaacccagaaccatcagtccagggacggccccaccca 956
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 756
Length of database: 1156
Length adjustment: 10
Effective length of query: 746
Effective length of database: 1146
Effective search space: 854916
Effective search space used: 854916
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
