Query= MSMg01no304_k15.b1 MSMg01no304_k15.b1 CHROMAT_FILE:
MSMg01no304_k15.b1 PHD_FILE: MSMg01no304_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:36 2005
(691 letters)
>mm_chr4_59029658_59030750
Length = 1093
Score = 1284 bits (664), Expect = 0.0
Identities = 683/690 (98%), Gaps = 4/690 (0%)
Strand = Plus / Plus
Query: 5 gaattctttggtcagaatctatacgattaagagagataggttaccttatctatgaggtgg 64
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttggtcagaatctatatgaataagagagataggttaccttatctatgaggtgg 264
Query: 65 ctctcgtc-ctgttttatgatagtaagtactacacatcttcaaggggattgtgcagtgtc 123
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctct-gtcactgttttatgatagtaagtactacacatcttcaaggggattgtgcagtgtc 323
Query: 124 ctctgatagcagagcagccatgggaaagattaagacaggcggtatcttttttacaaagaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctctgatagcagagcagccatgggaaagattaagacaggcggtatcttttttacaaagaa 383
Query: 184 agaatgaagctcagagaaaggccacacatctagactttgacctttgtgttatctcagaga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agaatgaagctcagagaaaggccacacatctagactttgacctttgtgttatctcagaga 443
Query: 244 tgtctcagtgttctagagatggttaggtacagactagctttacctgttttttgctatctt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgtctcagtgttctagagatggttaggtacagactagctttacctgttttttgctatctt 503
Query: 304 aatcattgctttcagcagaaaactttctaggcaaagctggaacttgattgaatataaata 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aatcattgctttcagcagaaaactttctaggcaaagctggaacttgattgaatataaata 563
Query: 364 gtagtagatgagccatattttctttctgtggtttatgaataagtgtcagaatgtcctgaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtagtagatgagccatattttctttctgtggtttatgaataagtgtcagaatgtcctgaa 623
Query: 424 gttataggaactttgcattgtattatagtgttagctgaaggtaatttgttgttaaaatgt 483
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gttacaggaactttgcattgtattatagtgttagctgaaggtaatttgttgttaaaatgt 683
Query: 484 tg--ttttccaagaatactaataattctaaagaatttggggaatgcttttattctgtctt 541
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgagttttccaagaatactaataattctaaagaatttggggaatgcttttattctgtctt 743
Query: 542 tatatctaacataaggttggtatacatgcctctaagagtattggaaagttttttgacttg 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tatatctaacataaggttggtatacatgcctctaagagtattggaaagttttttgacttg 803
Query: 602 atattttattaaagttaacagattacagactgaggctcttaatgaaataccatgtaacgt 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 atattttattaaagttaacagattacagactgaggctcttaatgaaataccatgtaacgt 863
Query: 662 cacatcttcttcacttcccaggatgaagaa 691
||||||||||||||||||||||||||||||
Sbjct: 864 cacatcttcttcacttcccaggatgaagaa 893
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1093
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1083
Effective search space: 737523
Effective search space used: 737523
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no304_k15.g1 MSMg01no304_k15.g1 CHROMAT_FILE:
MSMg01no304_k15.g1 PHD_FILE: MSMg01no304_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:36 2005
(715 letters)
>mm_chr4_59111698_59112812
Length = 1115
Score = 1313 bits (679), Expect = 0.0
Identities = 708/721 (98%), Gaps = 6/721 (0%)
Strand = Plus / Minus
Query: 1 acccaaatataaagtcaatgatgaacatctgaataggcccattatccacagctcagtagg 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 893 acccaaatataaagtcaatgatgaacatgtgaataggcccattatccacagctcagtagg 834
Query: 61 aaaaaaaaaaccattatggaatactatgtatgtgaatattgtgtaattctgtttaaaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 aaaaaaaaaaccattatggaatactatgtatgtgaatattgtgtaattctgtttaaaatt 774
Query: 121 cttgataaatttgaataattttcgcattactttcaagtggtggggctacagatcattttt 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 773 cttgataaatttgaataatttttgcattactttcaagtggtggggctacagatcattttt 714
Query: 181 cttagtgtccactggaatttggcaaattttccaggataaacatatattgtttattaataa 240
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 713 cttagtgtccactggaatttggcaaaatttccaggataagcatatattgtttattaataa 654
Query: 241 atatgttttaggatagatacagataaaatcaatacttttatatcacagaaagacagttac 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 aaatgttttaggatagatacagataaaatcaatacttttatatcacagaaagacagttac 594
Query: 301 aggagtgatgattaatggcacatttgaggaaattgttccaagttccaatccaaactctcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 aggagtgatgattaatggcacatttgaggaaattgttccaagttccaatccaaactctcc 534
Query: 361 acctggaatagagaacgataaactgttccccagtaaggactacgtagacgactttattcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 acctggaatagagaacgataaactgttccccagtaaggactacgtagacgactttattcc 474
Query: 421 tgtcaagtgctccttgtactaccccggagtgaaagcggagcaccaaggtaggaatattag 480
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tgtcaagtgttccttgtactaccccggagtgaaagcggagcaccaaggtaggaatattag 414
Query: 481 tgtttcctactaatcctactaatatacaaaacttcatgtctgtgagcttttgctcagttg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tgtttcctactaatcctactaatatacaaaacttcatgtctgtgagcttttgctcagttg 354
Query: 541 tattttagtttaagtttgcttaaactcaaggtaacctgtacagatttgatcctggtgtgt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tattttagtttaagtttgcttaaactcaaggtaacctgtacagatttgatcctggtgtgt 294
Query: 601 tccagcatgttcctgtaatgtcattgaaagtccagagcttgtgataacagaagtgtttaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tccagcatgttcctgtaatgtcattgaaagtccagagcttgtgataacagaagtgtttaa 234
Query: 661 agttatgtctgtatgttgtttctcaaaacatcc------atactcggtcttacctaatat 714
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 233 agttatgtctgtatgttgtttctcaaaacatcctaaaagatacttggtcttacctaatat 174
Query: 715 a 715
|
Sbjct: 173 a 173
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 715
Length of database: 1115
Length adjustment: 10
Effective length of query: 705
Effective length of database: 1105
Effective search space: 779025
Effective search space used: 779025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
