BAC Information

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BAC

Clone NameMSMg01-304M01
Chromosome4 (Build37)
Map Location 141,698,444 - 141,699,205
singlet/doubletsinglet
Overlap gene9030409G11Rik
Upstream geneFbxo42, 6330545A04Rik, Arhgef19, Epha2, Gm693, Clcnka, Clcnkb, Hspb7, Gm694, Zbtb17, Spen, LOC100042951, B330016D10Rik, Fblim1, BC025833, Slc25a34, Plekhm2, Ddi2, Agmat, Dnajc16, Casp9, Ela2a, Ctrc, Efhd2, Fhad1, Tmem51
Downstream geneEG665983, LOC546484, 6330411D24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304M01.T7 (MSMg01no304_m01.b1)MSMg01-304M01.TJ (MSMg01no304_m01.g1)
ACCAG429938AG429939
length1,2381,311
length of high quality
(start - end)		451 (87 - 537)742 (90 - 831)
definitionCHROMAT_FILE: MSMg01no304_m01.b1 PHD_FILE: MSMg01no304_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:49 2005CHROMAT_FILE: MSMg01no304_m01.g1 PHD_FILE: MSMg01no304_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCATTCTTTNNNNNTCATTGGGCGCTAAGACTCCTAAGGGAGAGGATC
CGCGGAATTCTGATATCAGTATGTACCATTAAAGATAGACCACAAATGTA
TTTCTGGAATATTTTTCTTACCAGGCATACATTGAATTAATATATATGAA
TGTATATACATATATAATATTAATATATGTGTGAATATAAATCTATTCAG
GCAGTCCTCTCATAGTCCTGCAGCATCCCCCCTACTCCACAGAAGAGGAA
ACTGATGCAGAACAGAGCTCTGGGTAGATAGGATTTAAATGGAGGATAAG
TCAGGCCAAGCAGTGATCCAGCTATAATCCCAGCTACTCAGAGGGCTGAG
GCAGGAGGATTGCAGATTCAGGGCTAGCTTAGGCAACTTATCAAGCCCCT
GCCTCAAAATGAAAAGTAAAAAAGGGTTGGGGATATATCCTAGTGGCAGA
GTGCATGCCCAGTGTATGTGGGCCCCTAGATTCAAGCCCCAGCACTGCAC
AAATGAGTGGATGGATGGATGGATGGATGGATGGATGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTT
TTTNNNNNNNNNTNTNNNTTTNTTTTTTTNTTTTTTTTTTTTTNTNTTNT
TTNNNTTTTTNNNNTTNTTTTTTTTTTTTTTTTTTTTTTNNNTNTNTTTT
TTTTTNTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTNTTT
TNTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTNNTNTTTTTTTTTTTTTTTTTTT
NNTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTT
TTTNTTTTTTNTTTTTNTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTNTTTTTTNTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTNTTTNTT
TTTTTTTNTTTTTTTTTTTTNTTTTTTTTTTTTTTTTT

NCCCGGCCCATNNNNNNAAGAGGTGAGGCTGGGGCGCCXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTTAAGTGAAGGGCCCAG
GAATCTGCATTAAAGATGTCCGTAGTCTGGGGCTAGAGAGATGGCTCAGT
GGTTAAGAGCAACGACTGCTCTTCTGGAAGACCCAGTTTCGATTCCCAGC
ACCCACACTGTGGCTCACAACTATCTGTAGCTACAGTTCCAGAGGATCTG
ATACCTTCGCAGAGACAAACATGCATGCAAAACACCAATGCACATCAAAT
AAAAATAAGTCATTTATATATATATCTGGGGTCTTATCTAGGGGAACCTT
ATGCAGATGGATAGTGCACAGACAGAAAATGTGAAGCATCCTAATACGAG
AGATGCTGCCCTCATTACCTTCTCTGTGTGCCTTTCTCATACTGCTGACA
AAAATGGGGCCAGACCTACCAGTAGCCAGGGGCTGAAAATGCCCACTGCC
TTTGAAGAATGAAGAATGAAGCTAACGATAATCCAGAGACCTAGGTGCAA
GGGGAAGATGCTCACCGCAGCAGCAACAGGATACGGGGTGTGTGGTGTGC
ACAGTGGGCTTACAGGATAGAGATGTGTAGTGTGCACAGTGAGCCTACCA
GGTCAGGCAGAGTGTATGCTCGGGTGCCAGCACACGTGTGTGACTCAAAG
AGGGGTTCTATTCCTCTCTGTCTTGGGCAGTCCAAAACTGGCATTGAGAT
GATTGACAGTTCAGAGCAACAAGGCTGGGAGAGGACAAGGTGGCGTGTAG
GGAGGCTCCAGGCACCCAAGGAAGCTATACCCACCTGTACAATAGGGTTG
TGTAGGCTCTTCTGAACTGGGCCGGGACTGTCGCCCTATAGCCCAAGGAG
AAGAAGATGAAGCCGCCGACACCTGAAACCCTTAGGTCCAGGGGTCCTGT
GAGGATGGGGGAAAAACCCCATCTCCTCCGAGTTGTCTTGGCTTTCTTGG
TGGGAACCCCCTGTAATAGCCTCTGGGCGCTCTCAAAGATTATTGTTGGG
CCTTGGCCCCATCCTATCAATTTAACAAGGGGTCTTCTCCCTGGTCTTTC
CTCCTTCTTCCTCTTAAATAATATCCCTCCTCATGTTCCTGCGTAATAGG
AAATAGTGTCTCTTCGATTTGTTCCCTATTAATTTTCTTTTCTATGTACT
ATTTAATGTGTCATTTTATTCTAACCTTCTCTACCCTCCTTTCTTCTCAT
TTCTACTACTACACTCTCTATCTATTTTCCACCTCTACCTATCTTCTTCT
GTCTACTTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_m01.g1 MSMg01no304_m01.g1 CHROMAT_FILE:
MSMg01no304_m01.g1 PHD_FILE: MSMg01no304_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:49 2005
         (742 letters)



>mm_chr4_141698264_141699405
          Length = 1142

 Score = 1241 bits (642), Expect = 0.0
 Identities = 723/768 (94%), Gaps = 32/768 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaagggcccaggaatctgcattaaagatgtccgtagtctggggctagagagatggctcag 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 181 gaagggcccaggaatctgcattaaagatgtctgtagtctggggctagagagatggctcag 240

                                                                       
Query: 61  tggttaagagcaacgactgctcttctggaagacccagtttcgattcccagcacccacact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tggttaagagcaacgactgctcttctggaagacccagtttcgattcccagcacccacact 300

                                                                       
Query: 121 gtggctcacaactatctgtagctacagttccagaggatctgataccttcgcagagacaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gtggctcacaactatctgtagctacagttccagaggatctgataccttcgcagagacaaa 360

                                                                       
Query: 181 catgcatgcaaaacaccaatgcacatcaaataaaaataagtcatt--tatatatata--- 235
           |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||   
Sbjct: 361 catgcatgcaaaacaccaatgcacatcaaataaaaataagtcattaatatatatataaag 420

                                                                       
Query: 236 ----------tctggggtcttatctaggggaaccttatgcagatggatagtgcacagaca 285
                     |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 421 tgtatgtatgtctggggtcttatctaggggaaccttatgcagatggatagcgcacagaca 480

                                                                       
Query: 286 gaaaatgtgaagcatcctaatacgagagatgctgccctcattaccttctctgtgtgcctt 345
           ||||||||||| |||| |||||| ||||||||||||||||  ||||||||||||||||||
Sbjct: 481 gaaaatgtgaaacatcttaatactagagatgctgccctcaagaccttctctgtgtgcctt 540

                                                                       
Query: 346 tctcatactgctgacaaaaatggggccagacctaccagtagccaggggctgaaaatgccc 405
           |||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 541 tctcatactgttgacaaaaatggggccagacctaccagcagccaggggctggaaatgccc 600

                                                                       
Query: 406 actgcc-----tt------tgaagaatgaagaatgaagctaacgataatccagagaccta 454
           ||||||     ||      |      ||||||||||||||||||||||||||||||||||
Sbjct: 601 actgcccgtggttccgtctt------tgaagaatgaagctaacgataatccagagaccta 654

                                                                       
Query: 455 ggtgcaaggggaagatgctcaccgcagcagcaacaggatacggggtgtgtggtgtgcaca 514
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 ggtgcaaggggaagatgctcaccgcagcagcaacaggatacggggtgtgtggtgtgcaca 714

                                                                       
Query: 515 gtgggcttacaggatagagatgtgtagtgtgcacagtgagcctaccaggtcaggcagagt 574
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 gtgggcttacaggatagagatgtgtagtgtgcacagtgagcctaccaggtcaggcagagt 774

                                                                       
Query: 575 gtatgctcgggtgccagcacacgtgtgtgactcaaagaggggttctattcctctctgtct 634
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 gtatgctcgggtgccagcacacgtgtgtgactcaaagaggggttctattcctctctgtct 834

                                                                       
Query: 635 tgggcagtccaaaactggcattgagatgattgacagttcagagcaacaaggctgggagag 694
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 tgggcagcccaaaactggcattgagatgattgacagttcagagcaacaaggctgggagag 894

                                                           
Query: 695 gacaaggtggcgtgtagggaggctccaggcacccaaggaagctatacc 742
           |||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 895 gacaaggtggggtggagggaggctccaggcacccaaggaagctatacc 942


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 742
Length of database: 1142
Length adjustment: 10
Effective length of query: 732
Effective length of database: 1132
Effective search space:   828624
Effective search space used:   828624
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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