BAC Information

Click to search

BAC

Clone NameMSMg01-304N20
Chromosome4 (Build37)
Map Location 7,529,651 - 7,530,337
singlet/doubletsinglet
Overlap genenone
Upstream geneTox, LOC100039421, LOC666700
Downstream geneCar8, LOC100039494, LOC100039505, LOC100039478, Rab2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304N20.T7 (MSMg01no304_n20.b1)MSMg01-304N20.TJ (MSMg01no304_n20.g1)
ACCAG430015AG430016
length1,2931,312
length of high quality
(start - end)
689 (132 - 820)771 (91 - 861)
definitionCHROMAT_FILE: MSMg01no304_n20.b1 PHD_FILE: MSMg01no304_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:04 2005CHROMAT_FILE: MSMg01no304_n20.g1 PHD_FILE: MSMg01no304_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCCGTTCANNNNNNNNACATTGGGCGCTAXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCCCATTTAATCAAGGGTCCTTTTAGATCCAATTAAT
TACAGAGACTCTCAGTTCCACCACTTTGAAGCTGAAAATCACTGTTTCAT
TTAATTTTTGAAGCCCTGGGGGAAACCTCAACAAAGAAATACAACAAGGA
ATTTCTAAACTTCTTATGGAAGTTGGAGAAAGAGTAGTGGCTGCCTAAGG
ACATCAAGACTTGGGAAACCCCAAGCCAGTAAAACCTATGCCTATCCCTG
TGTTTTAGTAGTCCCTTCTATGTATATCTCTGAGCAATGTACATTACCAG
TGAAAAAAATATTCAAAGAAAAGCCATTGTCCAGAAGCCATGAGACTCAC
TAACATGTAGCCTAATACCAGAAATTCTTGGTTTTAGCCACAGCCATACC
ACTTTCTATCAAAAGCCAAGACAAAGGTCCCCTCTCTCTACCTCATCCTT
AACCAGCACACACACACATCATTATCAGGGGTTCAGGAAAATTGATCTGG
AATTTGGAAGGAAGTCTTCCAGCCTACCACCAGGACAGAAGGAAGCAGCT
GATAGGCTCCTCTAGAACTCTGTGCTAAATCACCTGTCTGGACTGGACAC
AAAGGATCACCCTTCCTTCCTCAACATGCACTCAATGTGCACAAAAAGAC
AACTGAACATCTAGTCCTTGCCTGGCAATCAGGTGTGCTTCAAAACCACA
GTTAGTATCTAGAGATAAGCAGAGGATCCTCCTGCCTTAGTAGTAAAATG
AGAAGGAAGGCAGCAAGTGGAAGAAGATGCTGTCACCACTGTACTGTGTT
CTTTATCTGTGAATAAACCTTCCAAACATCATAAAACAATGGGAAATGGA
ACAGAAATCCGCCTAACAATATGTGGCCAAAGGAAAAAACTCAGTATTTA
CTAAAGCAAATTTAAAACTTAAAATGGGAAATTCTTAACATGTCCTAACC
CCCACAGGATATAAAAAAAAGCTTTGAGTACTAACCTTTCCAAAAAAAGA
CTCCCACCAAAATTCTAGTTTCTCTCCCACCCTAAAGAAGAAAGCTAACC
CCCTTAGGGACAAAAAAAAAAAGGTGGTAAAAGAAACAAATGGGGTTTAA
TCTTGAAAATGTTGGAAAAAAACTGCTTTTCCAAAGCCCATAATTTAGAA
CCCTCCCACGGAGAGATTATAAAAAGGTGGAGTCCTTTTAAAAAAAAAAA
AACAAGGTTATCCCTTAAAAAGACACAAAAGAAGTGGTAAAAT
NNCCGATTCCNNNNNNAATGCATGGAGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTCAACTAGCAACTTAACA
GCACATCAGAAACTCTAGACCTAATAGAAGCAAATGTACCCAAGAGCATG
GATGGCAGAAAACAATCAAACTGAGGGCTGAAATCAATAAAATAGAAAGA
AAGAGAGACAGAGACAGAGACAGACAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATACAAAGAATCA
ATACAAGAAAGAATTGGAGAAAAATCAGTAAAATAGGAAAGCCTGTATCT
TTATTAAGTAAAAGGCAAAGAGAATATCCAAATCAACAAAACCAGTAACA
AAAAGCAGTACATATCAACCAAAAGCAAGGAAATCCAATGAACTATAAAG
TCATATTTCAAAAACCTATACTCCAAAAAACTGGAAAATTTAAAACAAAT
GGAGAATTTTCTCGATAGATGCCACATACCAAAGTTAAATCAAGATCAGG
TAAACAACTTAAATTGGTCTATTTAATCCCTCAGAAAATAGAAATACTCA
TTCAAAGACTCCCAAACAGAAAAAGCCCAGAGGCATAGTTTTAGTGAAGA
ATTCTATGAGACTTTGAAAGAAGACCTAAGGCCAATACTCCTTAAATTAT
TCCACAAAATAGAAACAGAAAAAACATTGTCAAATTTATATGAAGTCAGA
TTTACCCTGATATCCAAACCACATGATGATTTCTCAAAGAGAATTATATA
CCAATCATCAACTTGATGCAAATGTATTCAATAAAATACTTGAAATCTGA
ATATAAGAACACATNCAAAGGAACATCCACTATGATCAAACAGGCTTCAT
TCCAGAAATGCAGGGATGGATCAGCACACAAAATTTGTCCACATAATTTA
CCCTATAAATAATATAAAAGAAAAAAAACCCCGATGAATATACCCTTAGA
AGCCCAACAACATTTAAAAAAACCCAAACCCTTCCTGACAAATGCCTTGG
AAAAAATCAGGAACCAGGGACAAACCTAACCTAATAAAGGCGATTTCAAG
AAAGTCTTTTCCCACCTCCAATTAAAGGGAGGAAAAGTAAATTATTTCTC
TAAACCCGGAGAGGAAGGGGGGCGGGCCTTCCTTCTCTTTCCAAATTACC
CAAGGTTACGTAAGATAACACCCCATGAAAAAGGGGGTCCCTTAAAGCGA
AATTCAAAAAAAAAGAACTCCATATAACAGGACCCTTCCCTAAACCTTCC
AAGAATATAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_n20.b1 MSMg01no304_n20.b1 CHROMAT_FILE:
MSMg01no304_n20.b1 PHD_FILE: MSMg01no304_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:04 2005
         (689 letters)



>mm_chr4_7529451_7530540
          Length = 1090

 Score = 1288 bits (666), Expect = 0.0
 Identities = 682/688 (99%), Gaps = 3/688 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgaaaatcactgtttcatttaatttttgaagccctgggggaaacctcaacaaagaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgaaaatcactgtttcatttaatttttgaagccctgggggaaacctcaacaaagaaata 260

                                                                       
Query: 61  caacaaggaatttctaaacttcttatggaagttggagaaagagtagtggctgcctaagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caacaaggaatttctaaacttcttatggaagttggagaaagagtagtggctgcctaagga 320

                                                                       
Query: 121 catcaagacttgggaaaccccaagccagtaaaacctatgcctatccctgtgttttagtag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catcaagacttgggaaaccccaagccagtaaaacctatgcctatccctgtgttttagtag 380

                                                                       
Query: 181 tcccttctatgtatatctctgagcaatgtacattaccagtgaaaaaaatattcaaagaaa 240
           |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 381 tcccttctatgtatatctctgagctatgtacattaccagtgaaaaaa-tattcaaagaaa 439

                                                                       
Query: 241 agccattgtccagaagccatgagactcactaacatgtagcctaataccagaaattcttgg 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 440 agccattgtccagaagccatgagactcactaacatgtagcctaaaaccagaaattcttgg 499

                                                                       
Query: 301 ttttagccacagccataccactttctatcaaaagccaagacaaaggtcccctctctctac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttttagccacagccataccactttctatcaaaagccaagacaaaggtcccctctctctac 559

                                                                       
Query: 361 ctcatccttaaccagcacacacacaca--tcattatcaggggttcaggaaaattgatctg 418
           |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 560 ctcatccttaaccagcacacacacacacatcattatcaggggttcaggaaaattgatctg 619

                                                                       
Query: 419 gaatttggaaggaagtcttccagcctaccaccaggacagaaggaagcagctgataggctc 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gaatttggaaggaagtcttccagcctaccaccaggacagaaggaagcagctgataggctc 679

                                                                       
Query: 479 ctctagaactctgtgctaaatcacctgtctggactggacacaaaggatcacccttccttc 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctctagaactctgtgctaaatcacctgtctggactggacacaaaggatcacccttccttc 739

                                                                       
Query: 539 ctcaacatgcactcaatgtgcacaaaaagacaactgaacatctagtccttgcctggcaat 598
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ctcaacatgctctcaatgtgcacaaaaagacaactgaacatctagtccttgcctggcaat 799

                                                                       
Query: 599 caggtgtgcttcaaaaccacagttagtatctagagataagcagaggatcctcctgcctta 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 caggtgtgcttcaaaaccacagttagtatctagagataagcagaggatcctcctgcctta 859

                                       
Query: 659 gtagtaaaatgagaaggaaggcagcaag 686
           ||||||||||||||||||||||||||||
Sbjct: 860 gtagtaaaatgagaaggaaggcagcaag 887


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1090
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1080
Effective search space:   733320
Effective search space used:   733320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)