Query= MSMg01no305_i09.b1 MSMg01no305_i09.b1 CHROMAT_FILE:
MSMg01no305_i09.b1 PHD_FILE: MSMg01no305_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:45:33 2005
(419 letters)
>mm_chr4_65049054_65049872
Length = 819
Score = 746 bits (386), Expect = 0.0
Identities = 401/406 (98%), Gaps = 1/406 (0%)
Strand = Plus / Plus
Query: 15 gaatt-atcgaggtggagtctctcagtttgaatgcagggctcactgacatggctagtatg 73
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 gaattcatcgaggtagagtctctcagtttgaatgcagggctcactgacatggctagtatg 273
Query: 74 gttagacagcttacactgaggatcccttgtctttgatgtagaaggatgccacaatgctta 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gttagacagcttacactgaggatcccttgtctttgatgtagaaggatgccacaatgctta 333
Query: 134 ctcattatttacatgggtgctgggatataaactccaagcttgtcttcatgttttcctctt 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ctcattatttacatgggtgctgggatataaactccaagcttgtcttcatgttttcctctt 393
Query: 194 atgctgagttgtccctgcatgtcccttttgtgtgttcttcatgaaagaaaggggccttgg 253
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 394 atgctgagttgtccctgcatgtcctttttgtgtgttcttcatgaaagaaaggggccttgg 453
Query: 254 tttatggagaaatgccatccaatttacctcttatgagcagttcatgaggaaacctagtat 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tttatggagaaatgccatccaatttacctcttatgagcagttcatgaggaaacctagtat 513
Query: 314 gtcactgtgtccaatacactgttctcagagagaagagcacactcactgaggttctattca 373
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 514 gtcactgtgtccaatacactgttctcagagagaagtgcacactcactgaggctctattca 573
Query: 374 aggagagggtgaattttttcaccttctggaagtcttttggatcatt 419
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 aggagagggtgaattttttcaccttctggaagtcttttggatcatt 619
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space: 332100
Effective search space used: 332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no305_i09.g1 MSMg01no305_i09.g1 CHROMAT_FILE:
MSMg01no305_i09.g1 PHD_FILE: MSMg01no305_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:45:34 2005
(383 letters)
>mm_chr4_65236921_65237703
Length = 783
Score = 621 bits (321), Expect = 0.0
Identities = 366/381 (96%), Gaps = 2/381 (0%)
Strand = Plus / Minus
Query: 3 gggggcggtcgctttcagagggaaaggggaatggggatggggaaagaactctgggtggag 62
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 700 ggggg-ggtcgctttcagagggaaaggggaatagggatggggaaagaactctgggtggag 642
Query: 63 acctggaggggggcaacatttgagatataaataaaaagaacaattaatt-taaaaaaaac 121
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 641 acctggaggggggcaacatttgagatataaataaaaagaataattaattaaaaaaaaaac 582
Query: 122 tagtttcctcatcaacaaagtgggtatggataagtttacctcagaagtgtcatgttgaat 181
|||||| |||||||||||| ||||| |||||||||||||||||||||| |||||||||||
Sbjct: 581 tagttttctcatcaacaaaatgggtttggataagtttacctcagaagtctcatgttgaat 522
Query: 182 aattaggagatcacgtgatagaattttgaaggttgttaaatatttaatgtctggtgattc 241
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 521 aattaggagatcacttgatagaatttcaaaggttgttaaatatttaatgtctggtgattc 462
Query: 242 acttccagtcttgtgaggattttagttgtcatgttgtcttaggaaaagtcacatataatt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 acttccagtcttgtgaggattttagttgtcatgttgtcttaggaaaagtcacatataatt 402
Query: 302 ttggtcttgttgtggttgtttggccttcttgttcatctttattctctgccaaaacactta 361
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 401 ttggtcttgttgtggttgtttggccttcctgcacatctttattctctgccaaaacactta 342
Query: 362 tttgcttcatttccatttctt 382
|||||||||||||||||||||
Sbjct: 341 tttgcttcatttccatttctt 321
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space: 289476
Effective search space used: 289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
