BAC Information

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BAC

Clone NameMSMg01-305N02
Chromosome4 (Build37)
Map Location 85,182,877 - 85,183,263
singlet/doubletsinglet
Overlap geneA930009N24
Upstream geneBnc2, LOC100040660, LOC624465, LOC100040284, D530005L17Rik, LOC622811, LOC100040303, Sh3gl2
Downstream geneLOC668052, Adamtsl1, 4930500O09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305N02.T7 (MSMg01no305_n02.b1)MSMg01-305N02.TJ (MSMg01no305_n02.g1)
ACCAG430665AG430666
length1,3111,257
length of high quality
(start - end)
387 (516 - 902)781 (129 - 909)
definitionCHROMAT_FILE: MSMg01no305_n02.b1 PHD_FILE: MSMg01no305_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:13 2005CHROMAT_FILE: MSMg01no305_n02.g1 PHD_FILE: MSMg01no305_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCGGTTTNNNNNNNAGCAGTGGGCGCTATAGACTCCTATAGGGAGAGG
ATCCGCGGAATTCTGTAAAAAAACAAACACCCCTTTGCCACAAACATAAA
ATGGCTTAAACCAGGAAAAACCTCTAGAACCCTAAACTGTCAGACGTGAG
AACAAGGATGAGGCAGGGGCTCATGAGTTAGAGACCTGTCTGTGCCATCG
CAAGATCTTGTATCAAACAACAGGAAAGAAAAATTGAAAAATAGAACACC
CTGTGTCAGAGAATGGGAAAATAAAAACCTTAGGCAGCAGGAGCGTCCCT
GCTTCCTCTGCAGGCCCCGGGGGAGAGTCTGTTCTTTGTCCCTTTCAGTT
TCTGCTGGCTTCCAGCATTCCTTAGTTGTCCGACTTTGTGGATAGTTCAT
TTCAACTCTGCCTCTGTCTTATGCCCTTTTCTGTGTGTATTGGCCCTTTT
CTGACTCTTGTTATACTTTTTTTTCCCCCCCCCAGAATCACACAATCCTA
TGCCTCAGAAGAGGCTTGGCCACACCTGAGAAGGTGAGGTGTGGCCACTG
GGAGACCTGTTCAGCCTACTGCTTCCTGTGAGGTTTCTGGAGAACTTCCT
GGCTGCTGGTTTATCTCCCTCGGCAGTACTTTGCTTCAAAGGTGTGTGGT
TCTATTTCACTTCAGGGCTGTCTGCCTCTGTTCTTTGTTCTCTTATCTGT
AATACTGACCTGATCGCTTGGATCTTGGCGGTCTGTGTCATTGCTAGTGA
ATTTTATGTGGTCTGATGACAAGACATCACTGCTGCTCCTCAGCATCTCA
CTAAAGGACAACTCGGTGATCCATTGGCTCAGACCAGAAGTTCCTGACTC
TTGTTTCTCTCACAGGCCACACTTGAGCCTGGGCAGTGAATTTGGCTGAG
CCATGTCTTGCCCTTATTACTGGAAAGGTGCTACTTAAGTAGCCTCTGCG
TCCTTCTCACATACTCTTCTCATTATGCAATCTGGGTGATTCTGGTTACA
TGAGCCAGGGCATGTCTCCCTGTTATATACCCTGCCAGGATTTCCAGCTA
CCCCCTGGGTTGGGAAACCCAATCAATTTGGGCCCCTCTGGGAACTAAGC
GTTCGTTCCCCCTTTTAAAAATGGTCCCAATAATTGGGCTTTTGGTATTT
TCCAAAACCCCAAAACTTGCTTTTGGATTTATTGCTTGGACCAACCAACC
AACCCATTATTCTATCCTCTTTTTTTTGGTGAAAAAGAAAGAAATTTTTT
AAAAAAATTCCGGCCTTGCGGTGACCTTTATGTGTGAGAGAGGATATACC
CACACTTTTTC
NCCCAGCCATNNNNNNAACGCATGGAXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAAGGAGGAATACC
GAATGGCAGAGAAACACCTGAACCTTTGTTCAACATCCTTAATCATCAGG
GAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAAT
GGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAG
AAAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCA
CTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACC
GGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAA
CTGGTAAGAAGGACACTTGTTCCACTATGTTCATAGCAGCCTTATTTATA
ATAGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGAT
ACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAA
AGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATC
ACCCTGAGTGAGGTAACACATTCACAAAGAAACTCACACAATATATACTC
ACTGAAAAGTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGAT
ATAATTTGCTAAACACACGAAACTCAAGAAGAATGAAGACTGAAGTGTGG
ACACTATGCCCCTCCTTAGATTTGGGAACAAAACACCCATGGAAGGAGTT
ACAGAGACAAAGTTTGGAGCTGAGATGAAAGGATGGACCATGTAGAGACT
GCCATATCCAGGGATCCACCCCATAATCAGCATCCAAACGCTGACACCAT
TGCATACACTAGCAAGATTTTATTGAAAGGACCCAGATGTAGCTGTCTCT
TGTGAGACTATGCCGGGGCCTAGCAAAAACAGAAGTGGATGGTCACAGTC
AGCTTAAGGAAGGATCATAAGGCTCCCCAATGGAGGAACTAGAGAAAGGT
ACCCAGGGACTTAAAGGAACTGGCACCCTTTAGGTGGGAAAACCTTTTTA
ACTATACCCGTACCCCGAAGTCCTTGAATCTACGGGGAAAATATCACAAA
AAGGCCTAACTCGCCCCCTCGGAAAGAAAAGCCCTTGGGATTTGCAACTT
TATTATCCCCCCAAGGGGAAACCCCGGCCCAAAAAAGAAAGGTGGTCAGG
TATAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_n02.b1 MSMg01no305_n02.b1 CHROMAT_FILE:
MSMg01no305_n02.b1 PHD_FILE: MSMg01no305_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:13 2005
         (387 letters)



>mm_chr4_85182677_85183463
          Length = 787

 Score =  710 bits (367), Expect = 0.0
 Identities = 382/387 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggccacacctgagaaggtgaggtgtggccactgggagacctgttcagcctactgcttc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 ttggccacacctgagaaggtgaggtgtggccactgggagacctgttcagccttctgcttc 260

                                                                       
Query: 61  ctgtgaggtttctggagaacttcctggctgctggtttatctccctcggcagtactttgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtgaggtttctggagaacttcctggctgctggtttatctccctcggcagtactttgct 320

                                                                       
Query: 121 tcaaaggtgtgtggttctatttcacttcagggctgtctgcctctgttctttgttctctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaaaggtgtgtggttctatttcacttcagggctgtctgcctctgttctttgttctctta 380

                                                                       
Query: 181 tctgtaatactgacctgatcgcttggatcttggcggtctgtgtcattgctagtgaatttt 240
           ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 tctgtaatactgacctgatagcttggatcttggcagtctgtgtcattgctagtgaatttt 440

                                                                       
Query: 241 atgtggtctgatgacaagacatcactgctgctcctcagcatctcactaaaggacaactcg 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 atgtggtctgatgacaagacatcactgctgctcctcggcatctcactaaaggacaactcg 500

                                                                       
Query: 301 gtgatccattggctcagaccagaagttcctgactcttgtttctctcacaggccacacttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgatccattggctcagaccagaagttcctgactcttgtttctctcacaggccacacttg 560

                                      
Query: 361 agcctgggcagtgaatttggctgagcc 387
           |||||||||||||||||||| ||||||
Sbjct: 561 agcctgggcagtgaatttggttgagcc 587


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)