BAC Information

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BAC

Clone NameMSMg01-306A10
Chromosome4 (Build37)
Map Location 16,648,153 - 16,648,381
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040095, LOC633695, Calb1, Decr1, Nbn, Osgin2, Ripk2, LOC667150, LOC383994
Downstream geneLOC100040154, LOC667212, LOC100040173
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306A10.T7 (MSMg01no306_a10.b1)MSMg01-306A10.TJ (MSMg01no306_a10.g1)
ACCAG430809AG430810
length763765
length of high quality
(start - end)
229 (139 - 367)241 (130 - 370)
definitionCHROMAT_FILE: MSMg01no306_a10.b1 PHD_FILE: MSMg01no306_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:40 2005CHROMAT_FILE: MSMg01no306_a10.g1 PHD_FILE: MSMg01no306_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAATGTGTATACCTTTATCCATTTATCAGTTAATGCATGTTT
ATTTTGATCCATTTGCTTATTTCTTTGACTGGAGAAATATAAAGGAATGT
AGATGTTTAAGTATCTCTGTGGTAGGGTACAATGTGCTGGTTCATGTGGC
AGTCTTAGTTCAATTTTTAACTTTTATTAAATACCCAGTATTACTCTAAT
GGAGAAAAGTGATTTACTTTCTCTCCCAGCACATATAAGTGACAGTTTAG
ATGTATATCTTTACATTGGTGTCTAGGTTTTCATTCGTCTTTCATTCATC
CACTGTTTTAAAGCGTATTTTTTTTTACCTCCCCCCACCCAACAAAAACT
ATCACATCAGATTTGAATAAGACAAATTAAGGAAAAGAAAAGAGCCTAAG
AGAAGGCACAAAAATTTGTTTACTTACTTAGTAATGTCATAAAAACACTA
AACTGGAAGCTAAAATACGCATGCAGAGGATGTGGCGCAGACCTGTGCAG
GTCCTGTGCATTCTGCCTCAGTCTCCTGTGAGATCACATGAGCTTTGCTC
GTGTTGATTTAGAGGGTCTTATTTCCTCGGTGTCTTCTGTGCCTTCTGGA
TCTTACTCCTTCCATCTCTTCTTTTGTGGGGTCCCTTAAGCTCTGAGGGG
TGGGATTTGATTGATTTTTAAAGCTGTCCTTAAATTTTGCCCGAGCATAC
TTAATGTAAGAAN
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAGGAATTAAAGGGCATTATTCT
CAGCTCTTTTTGTGCCTCCTTCTTTGCCTAATGAGTTCATTTTCTCTTGG
TATCACAAAGTACCTAAGACTGGGTTTTATATATAAAGAAAGAAAAGAGG
TGTACTTAGCCCTCAATTTGGAAGGCTCAAAGATGAAGATCAGAGGACTT
CAGAGATAATTTAGTAAGTGAAGGACTTGTCTTACAGCCAAGATAACCTA
AATTAAAGCTTCAGAATTTAGGTAAAAATACCAGATGTGATTTTCAATCA
CAGCAACCATGACATGATTAGTGATTCTGACCCCCCCCTTACTGTTTAGC
CTAGTTTGTGAGTTCCAGGCCATTAAGATATGTTAACTAAAAGGGAGTGA
ATGGTGTTTCTGAGGACAGCACCGCACCTCAAGTTGTTCTATGGTTTTCA
CAATATGTAACTTCTATTATATTCATGGGCACACACACACACACACACAC
ACACAAACACACACAAACACACACACACACACACACACACCACACACACA
TGATCATAGGCACTCATACAAATAACTATACATACTTATATTAAAAAAAA
AGAAGTCTGGGTCTATGATATAACTCAGCCAGTATGTAAACCAGTCTCTA
AGCTTTACTACCTGATGTCAAATCCTAAGTCCAAAAATTAATTCCTAATT
ATTAGGTATCTCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_a10.b1 MSMg01no306_a10.b1 CHROMAT_FILE:
MSMg01no306_a10.b1 PHD_FILE: MSMg01no306_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:40 2005
         (229 letters)



>mm_chr4_16647953_16648581
          Length = 629

 Score =  435 bits (225), Expect = e-127
 Identities = 228/229 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataaaggaatgtagatgtttaagtatctctgtggtagggtacaatgtgctggttcatgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataaaggaatgtagatgtttaagtatctctgtggtagggtacaatgtgctggttcatgtg 260

                                                                       
Query: 61  gcagtcttagttcaatttttaacttttattaaatacccagtattactctaatggagaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagtcttagttcaatttttaacttttattaaatacccagtattactctaatggagaaaa 320

                                                                       
Query: 121 gtgatttactttctctcccagcacatataagtgacagtttagatgtatatctttacattg 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 gtgatttactttctctcccagcacatataagtgacagttcagatgtatatctttacattg 380

                                                            
Query: 181 gtgtctaggttttcattcgtctttcattcatccactgttttaaagcgta 229
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgtctaggttttcattcgtctttcattcatccactgttttaaagcgta 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)