BAC Information

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BAC

Clone NameMSMg01-306D02
Chromosome4 (Build37)
Map Location 136,768,274 - 136,944,854
singlet/doubletdoublet
Overlap geneWnt4, Cdc42
Upstream geneDdefl1, Tcea3, Zfp46, Hnrpr, Htr1d, LOC100042540, Luzp1, Aof2, LOC667080, LOC433770, 4930549C01Rik, BC029684, Ephb2, C1qb, C1qc, C1qa, Epha8, Zbtb40
Downstream geneLOC665533, LOC242711, Ela3, 1700013G24Rik, Hspg2, Ldlrad2, Usp48, Rap1gap, Akp2, Ece1, LOC100040558, Eif4g3, Hp1bp3, Kif17, Ddost, Pink1, Cda
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306D02.T7 (MSMg01no306_d02.b1)MSMg01-306D02.TJ (MSMg01no306_d02.g1)
ACCAG430927AG430928
length734704
length of high quality
(start - end)
685 (50 - 734)192 (68 - 259)
definitionCHROMAT_FILE: MSMg01no306_d02.b1 PHD_FILE: MSMg01no306_d02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:54 2005CHROMAT_FILE: MSMg01no306_d02.g1 PHD_FILE: MSMg01no306_d02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,944,266 - 136,944,854)(136,768,274 - 136,768,465)
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTTTACATGAAGGTTTTACAAGGTGTTAGAGATTCGCGGAG
TATTGTAGGCTAGCCATATCTTTGACTTAAAAAAGAAAAAAACAAACAAA
AAACCAAAAGAAAAGCAAAACAAAAACCCACCCTCACACCAGTAAGCAAC
GTTCCTCCTTGGCTTCGGCTCCGAGCTCCTGCCCTGGTTTCCTCGGGTGG
TGTGACTGTAACGTGTCAACTGTAACAAACTCTTTTCTTTCCGGGTTGCT
TCAAATCACAGTGTTTATCACAGCAACAGAAAGCAAAGTAGGACACTGGG
CTTGTCCAGTAGACCGCGCCAAGCCTCAGCGGGAGTGACCCCACCCAAGG
TGGAACAAGCCACTACCCCTTTCGTCTTTCTGGAGTGGCATCAGAGGTTC
CAGGGTGTGGCCTCGGAGACTAGAGGAATCCCTGCTCATCTCTTCTCTTT
TTACCACTGGGTCAGCGGGCGGAGGAAGGCGAAGCCCAAACAGCGCTTGG
CCCCGAAGCATGGAGAAGAGGCGAGTTAAAACCATAGACTAGCGTGACAC
GGTTGAGGTCTAGAGCGACGCTGCCGCTACGCTAGTCCCTCAATCAACTT
CCGCTTCCGGCAACAACCCGGAAGTCCCGCGATAAAGAGCTGGCGTCCCT
TTTCCGGACTCGGTAGCGGACTGTGGTCTTGGGC
NGATGCAGAAGNGGTCCTCTGCCCGCCACCCTGCGCCACACCCACCAGCC
TAGCCCAGCCCACGCAGCTTCAGTGGCTGAGGCTTTGGTGGGAGGAATGC
TTGCCGAGGACGCGGGGGTGGTGGGAGGGCAGGGTGCCCAGGTATCCAGG
GCATTGAGTGCACGAATGAAGAAGAAAGCTGGGTTCCAGTGTGTTTGACA
CCCCCCTATGTGCTTGCTGGAAAATGAGCATCTATCTTTGTGCACCGGGA
CACACATTCCCTGGAAGTTGAGACACTGTGAGCATGTGTGTGCATTGTGT
TGTGCGTGCGCGTGTGCGTGTGCGTGTGTGTGTGTGTGTGTGAGTGTGAG
TGTGTGTGTGGTGGTTGTAACACACCCCCCCCTTTCCTGTACCCTTTACT
GTTTTTTCCCCCCGCAAGATTTATTTAGCTATGCCTTTCCCCCCTTTCCT
TTTATATACCTATATCACCACGCCTTCCGTTGCACCACTTTTCTTTTTTC
CTTTTCCCCCCCTTCTCACCCTCCGGTCTTTCCATACTCCTCCCCCACCC
GTTTCCCCTTTTATGCCATTATGCCCAGTTAACCACCCCCCTTTAACCCC
CTTTCTTTTTTTTTTTTTTCTCACATGTCCTCTATCTTCCCGTTTCTTCT
CCCGCCACCCCCCTATCTCCACTTCCTCCCTTTTTTCCCCCCCTCCTTCC
CCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_d02.b1 MSMg01no306_d02.b1 CHROMAT_FILE:
MSMg01no306_d02.b1 PHD_FILE: MSMg01no306_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:54 2005
         (685 letters)



>mm_chr4_136943770_136944854
          Length = 1085

 Score = 1139 bits (589), Expect = 0.0
 Identities = 589/589 (100%)
 Strand = Plus / Minus

                                                                        
Query: 97   acaaaaaaccaaaagaaaagcaaaacaaaaacccaccctcacaccagtaagcaacgttcc 156
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1085 acaaaaaaccaaaagaaaagcaaaacaaaaacccaccctcacaccagtaagcaacgttcc 1026

                                                                        
Query: 157  tccttggcttcggctccgagctcctgccctggtttcctcgggtggtgtgactgtaacgtg 216
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1025 tccttggcttcggctccgagctcctgccctggtttcctcgggtggtgtgactgtaacgtg 966

                                                                        
Query: 217  tcaactgtaacaaactcttttctttccgggttgcttcaaatcacagtgtttatcacagca 276
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965  tcaactgtaacaaactcttttctttccgggttgcttcaaatcacagtgtttatcacagca 906

                                                                        
Query: 277  acagaaagcaaagtaggacactgggcttgtccagtagaccgcgccaagcctcagcgggag 336
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905  acagaaagcaaagtaggacactgggcttgtccagtagaccgcgccaagcctcagcgggag 846

                                                                        
Query: 337  tgaccccacccaaggtggaacaagccactacccctttcgtctttctggagtggcatcaga 396
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845  tgaccccacccaaggtggaacaagccactacccctttcgtctttctggagtggcatcaga 786

                                                                        
Query: 397  ggttccagggtgtggcctcggagactagaggaatccctgctcatctcttctctttttacc 456
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785  ggttccagggtgtggcctcggagactagaggaatccctgctcatctcttctctttttacc 726

                                                                        
Query: 457  actgggtcagcgggcggaggaaggcgaagcccaaacagcgcttggccccgaagcatggag 516
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725  actgggtcagcgggcggaggaaggcgaagcccaaacagcgcttggccccgaagcatggag 666

                                                                        
Query: 517  aagaggcgagttaaaaccatagactagcgtgacacggttgaggtctagagcgacgctgcc 576
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665  aagaggcgagttaaaaccatagactagcgtgacacggttgaggtctagagcgacgctgcc 606

                                                                        
Query: 577  gctacgctagtccctcaatcaacttccgcttccggcaacaacccggaagtcccgcgataa 636
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605  gctacgctagtccctcaatcaacttccgcttccggcaacaacccggaagtcccgcgataa 546

                                                             
Query: 637  agagctggcgtcccttttccggactcggtagcggactgtggtcttgggc 685
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545  agagctggcgtcccttttccggactcggtagcggactgtggtcttgggc 497


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no306_d02.g1 MSMg01no306_d02.g1 CHROMAT_FILE:
MSMg01no306_d02.g1 PHD_FILE: MSMg01no306_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:54 2005
         (192 letters)



>mm_chr4_136768074_136768665
          Length = 592

 Score =  356 bits (184), Expect = e-103
 Identities = 190/192 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttcagtggctgaggctttggtgggaggaatgcttgccgaggacgcgggggtggtgggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcagtggctgaggctttggtgggaggaatgcttgccgaggacgcgggggtggtgggag 260

                                                                       
Query: 61  ggcagggtgcccaggtatccagggcattgagtgcacgaatgaagaagaaagctgggttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcagggtgcccaggtatccagggcattgagtgcacgaatgaagaagaaagctgggttcc 320

                                                                       
Query: 121 agtgtgtttgacacccccctatgtgcttgctggaaaatgagcatctatctttgtgcaccg 180
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgtgcatgacacccccctatgtgcttgctggaaaatgagcatctatctttgtgcaccg 380

                       
Query: 181 ggacacacattc 192
           ||||||||||||
Sbjct: 381 ggacacacattc 392


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)