BAC Information

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BAC

Clone NameMSMg01-306E12
Chromosome4 (Build37)
Map Location 47,657,663 - 47,657,899
singlet/doubletsinglet
Overlap genenone
Upstream geneTbc1d2, Gabbr2, Anks6, LOC435781, Galnt12, Col15a1, Tgfbr1, LOC666236, LOC666473, Alg2, Sec61b
Downstream geneLOC100040788, Nr4a3, Stx17, Txndc4, Invs, Tex10, 5730528L13Rik, Tmeff1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306E12.T7 (MSMg01no306_e12.b1)MSMg01-306E12.TJ (MSMg01no306_e12.g1)
ACCAG430991AG430992
length766772
length of high quality
(start - end)
239 (126 - 364)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no306_e12.b1 PHD_FILE: MSMg01no306_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:01 2005CHROMAT_FILE: MSMg01no306_e12.g1 PHD_FILE: MSMg01no306_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAGGTCTATTTCTGACCCACTCTGTCCCTCTTCGACAAATCGTTTCTG
GGGTCTTTCCCTCCCTTTTGCCCGGATGTCGTATAGGATTGAGGTAAAAC
AAATGGGGTCAAATTGCCATGGTAGCCTTGACTGCTGTCAGTAGTGACTA
AGAGCTGTGTTCAGAAACTCAGCCTCCCAACAGACAGTTCAAATGTGGAC
ACACTGTGCAGTGAGGGTCAGCCATATATAGCACAGAAACACATTCTAGA
GAAGAATCATTTAAATCTGAAATGTGAACTTTGAAGAAAAGGACAGAGTG
TGGTATGTAGGATATTTTTGCACACTCTGCAAGTGCTCGGAGCAGAGAGG
ACAACCATGTAGGAGGGGAAGCTGGGACACAGGCCTCTGCTGAGTGTTCA
GCAGGAGGAGACTCTGGGTGTGGCCTTTCTAGGCCCTGGCCATTCCCAGA
CCTCTCCACTTTTGGTTTTACACTGTGAGGGCCAAGGAGTTGGGTGAGGC
TCCAGGCAGATGGCAACCACACACCACAGCCACGCTCCCTGCTGACACTG
AGGGCTGTCTGGTTTTCCTCACTGTCATGTTGGGCTCTAAGTCACCCACT
TAAGTCACCACTGGACAGGGAGAAGCTTGCAGCCTGCTTTGCCGAGCCCC
ATCCACCTCAGCCATTAGTGTGTTTAACAGCACTGGCCCCATGCTGACTT
CTGACATGCAGCAATT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGATTGGCT
GAGAAGCAACTAAAAAAATGTTCTTTTTAGTCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATAAA
AAACTCAGGTGACAGGAGATGCTGGCAAGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGCTAGTGGGAATGCAAGCTGGTACAAGCACTCTGGAAATCA
GTTTGGCGGTTCCTCAGAAAATTGGACATAGTACTACTGGAAGATCTAGC
AATACCACTCCTGGTCTATTATCCCCCCATGCTNNCCCTTGTAATAAGGA
CACATTCTCCACTATGTTCATAGCAGCCTTATTAATAATAGCCAGAGGCT
GAGAGGAACCCAGATGTCCCTCAACATAGGAATGGATACAGAAAATGTGG
TTCATTTACACAATGGAGTACTACTCAGCTATTAAAAATAATGAATTCAT
GAAATTTTTAGACAAATGGATGGTTCTGGAGGATATCATCCTGAGTGAGG
TAACCCAATCACAAAAGAGCAGATGTGATATACACTCACTCATAAGTGGA
TATTAGCCCAGAAGCTCAGAATACCCAAGATACAATTTGCATAACATATG
AAACTCAAGAAGAAGGAAGGCCAAAGTGTGGATACTTCGACTCTTCTTAG
AATGGGAACAAAATGCCCATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_e12.b1 MSMg01no306_e12.b1 CHROMAT_FILE:
MSMg01no306_e12.b1 PHD_FILE: MSMg01no306_e12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:01 2005
         (239 letters)



>mm_chr4_47657463_47658101
          Length = 639

 Score =  435 bits (225), Expect = e-126
 Identities = 234/237 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtcgtataggattgaggtaaaacaaatggggtcaaattgccatggtagccttgactgc 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 atgtcgtataggattgaggtaaaacacatggggtcaaattgccatggtagccttgactgc 260

                                                                       
Query: 61  tgtcagtagtgactaagagctgtgttcagaaactcagcctcccaacagacagttcaaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcagtagtgactaagagctgtgttcagaaactcagcctcccaacagacagttcaaatg 320

                                                                       
Query: 121 tggacacactgtgcagtgagggtcagccatatatagcacagaaacacattctagagaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggacacactgtgcagtgagggtcagccatatatagcacagaaacacattctagagaaga 380

                                                                    
Query: 181 atcatttaaatctgaaatgtgaactttgaagaaaaggacagagtgtggtatgtagga 237
           |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 atcacttaaatctgaaatgtgaactttgaagaaaaggacagagtgtggcatgtagga 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)