BAC Information

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BAC

Clone NameMSMg01-306F09
Chromosome4 (Build37)
Map Location 83,321,794 - 83,322,062
singlet/doubletsinglet
Overlap gene4930473A06Rik
Upstream geneZdhhc21, Cer1, Frem1, LOC667985, 1810054D07Rik, Snapc3, Psip1, LOC100040611
Downstream geneLOC668010, Bnc2, LOC100040660
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306F09.T7 (MSMg01no306_f09.b1)MSMg01-306F09.TJ (MSMg01no306_f09.g1)
ACCAG431032AG431033
length741736
length of high quality
(start - end)
74 (457 - 530)315 (84 - 398)
definitionCHROMAT_FILE: MSMg01no306_f09.b1 PHD_FILE: MSMg01no306_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:05 2005CHROMAT_FILE: MSMg01no306_f09.g1 PHD_FILE: MSMg01no306_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:05 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGGGCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGT
AGCCAAGATCAAAGTAAATGGACCCAAGCTGGAAGCAATCCCACTAAAAT
CAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTA
CTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGAT
ACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGA
TAGGATATATAAGTGACCCTAAATTATTCTACCAGAGAACTCCTAAACCT
GATAAACAGCTTCTGTTTTTTATCTCCCCCCCCCCCACACTCAAACAAGT
CAATGGACTTTCTCTATACNAAGAATAAACAGGCTGATAAAGACATTAGG
GGGACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTTGGCGT
GACTCTAACTAAGGAGGTGAAAGATCTGTATGATAAAAACTTCAAATCTC
TGAAGAAAGACATTAAGGAAGATCTCAGAAGATGGAAAGATCTCCCATGC
TCATGGAATGGAAGGATCAACATTTGTAAAATGCCTATCTTGCCAAAAGC
AATCTACAGATTCAATGCCATCCCCATCAAAAATCACACTCAATTCCTCA
ACGAAATGTAAAGAACAATTTTGCAAAATTTGTCTGGAAAN
CGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGAGAAAACCACAATCTGTCCTGACCTTG
TTGCTAGGATTCCCTGTGACATTAATAACTTACACATAAGTTCAAAATGT
ACTGATGCTTTGCTGATTAATCATAATAACCCACCATAATAACCCACCAT
GGCAGGCACTGTGAGTCACTAAGCCAAAGATAGTCACACTATGTAAACCA
ATCAAAGCCTGAGAAGGTTACTTGCTACACCAATCAAAATAAGCCAGCTA
TCCCTGTTGCCTAAATCTGTTCCCTTACAAGGTATAAAAAGTGTGCTCTT
TGTTTCTGGATCTCTCCTATTGCCTGGGTGCTGAAGGAGGTCCTCAATGC
ATAAGATCAATAAAAATGTTCTTGTGGTTTGCAGTGATGTTCGTCTCTGT
GGCCTTTGTAAGTGAACGTCTTTTGGTAGACTCCAATATTTGGCGCATTG
GCCAGTCAGATCCTTCTCAGAAGGCCCCAGACACCGTGCATTGGAGGACT
GCTTGAACTATGTAAAGCTGGATCCCTCTCTGTCTGTCTGCATGAATGAC
TGTCTTGTCAGTGTCAGCTTGCTTTGTCTTTTGAGAGGCTGGTTAGGGCC
TCACGTTTCTGATTCTGGTTTGAACATGGGAGGGTCATGACCAGTCCTCA
TGTTTCCTGGGGATCTTCTCCTTGAAAGAAACACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_f09.g1 MSMg01no306_f09.g1 CHROMAT_FILE:
MSMg01no306_f09.g1 PHD_FILE: MSMg01no306_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:05 2005
         (315 letters)



>mm_chr4_83321552_83322270
          Length = 719

 Score =  244 bits (126), Expect = 6e-69
 Identities = 239/286 (83%), Gaps = 26/286 (9%)
 Strand = Plus / Plus

                                                                       
Query: 31  ctgtgacattaataacttacacataagttcaaaatgtactga-tgctttgctgattaatc 89
           ||||||| |||||| || || ||||||||||||||||||| | |||||||    || | |
Sbjct: 243 ctgtgacgttaatagctgacccataagttcaaaatgtact-actgctttg----ttgacc 297

                                                                       
Query: 90  ataataacccaccataataacccaccat---ggcaggcactgtgagtcactaagccaaag 146
           | |||       ||||||||||||||||   ||||||||  ||||||||||||||||| |
Sbjct: 298 a-aat-------cataataacccaccatgggggcaggcagagtgagtcactaagccaagg 349

                                                                       
Query: 147 atagtcacactatgtaaaccaatcaaagcctgagaaggttacttgctacaccaatcaaaa 206
            ||||  ||||||| ||||||| ||| |||||| ||||||||||||||||||||| | ||
Sbjct: 350 gtagt--cactatgcaaaccaaccaatgcctgaaaaggttacttgctacaccaatgagaa 407

                                                                       
Query: 207 taagccagctatccctgttgcctaaatctgttcccttacaaggtataaaaagtgtg--ct 264
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||  ||
Sbjct: 408 taagccagctatccctgttgcctaaatctgc-cccttacaaggtataaaaagtgtgttct 466

                                                         
Query: 265 --ctttgtttctggatctctcctattgcctgggtgctga-aggagg 307
             ||||||| |||| | |||||| ||||||| ||||||| ||||||
Sbjct: 467 ttctttgtt-ctgggtttctcctcttgcctgtgtgctgagaggagg 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 719
Length adjustment: 9
Effective length of query: 306
Effective length of database: 710
Effective search space:   217260
Effective search space used:   217260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)