BAC Information

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BAC

Clone NameMSMg01-306G08
Chromosome4 (Build37)
Map Location 86,881,510 - 86,881,823
singlet/doubletsinglet
Overlap genenone
Upstream geneAdamtsl1, 4930500O09Rik, Rraga, 6230416J20Rik, LOC100040388, Adfp, EG624685, Dennd4c, Rps6, Asah3l, Slc24a2
Downstream geneMllt3, BC057079
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306G08.T7 (MSMg01no306_g08.b1)MSMg01-306G08.TJ (MSMg01no306_g08.g1)
ACCAG431072AG431073
length767826
length of high quality
(start - end)
321 (45 - 365)224 (75 - 298)
definitionCHROMAT_FILE: MSMg01no306_g08.b1 PHD_FILE: MSMg01no306_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:10 2005CHROMAT_FILE: MSMg01no306_g08.g1 PHD_FILE: MSMg01no306_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAAACTTCGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAATATTTGTGCTGTTCATCTCATAGCGTTGGACTGAGTACCACTA
ACCATTTCCCAGGGTCGTATGTGCCAAGTTGTATAGGTGGAGTACAGCAC
CTGCTTCTGAAACCACTGCTGACGTGTGATGGAGCTTGTGTGGGTGAAGC
TTTCCACACCATTCCATGTTGACAGGCCTCTGCCCCACCTCTGGGGTCAG
TCGAAGAGGCTGGGTGGCTGGGTTTGTTCACCTTCTCCGTGGTGGCTTCC
TTGGCAGTAATGACAGTTTCTCTCCTACCTGCTGCTCCTCTGTTTATCCC
TCAGTTGACTGGTATATTTTTAATGCCACCCGCCCGCGACAAAGAACCTC
ACAAGTGCTACAGATAGGAAGACAAGGACTTCCCTGAGAAACATCCATTT
TTCCCCCTGCCCCTGCCTCCGGCTTTCCAGACCCACTGTCATATTTACTG
TATTTCTTTGCTTATTGGAATGCAGCCCAGCATGTCTTCTAAGGGAGGTA
GGATGAAAAATGTTTGTCTCTACAAGCCTTGCACAGCTAACTGTAAATTT
TGGGGGTTAGAATGGGCCTTTCCTAGAAATGTTGAGGTGGTTTTTCTTGT
TTGTTTTTGTTTTTTGTTTTTTGGAAACAGGGCCTTCCTATAAAGTCCAG
ACTGACAATAAGTTTGTGTTTTACCTCCCTTAGCATCTTGCGGATGGCAG
TACACATGCTGCTGGGT
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTTTGATGTGATTAACTGGGCAGAA
ATTTGGAATGAAAGCAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGA
GAGAAAGAGAAAGCTGGAGCAATCTTGTATGTGTGTGCATGCAACTCTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
TTGTGCATGCCTGCCTGCCTGCCTGCCTGTCTGTCTGTGGTATTGTTCTT
CTTGCTTTTAACTAATTACTTTTTTTTTTTTTTTCTGAATGTGAGGAGCT
CAAACCCGGAAGTTTTAAGTGATTTCCCGAGGCGGAGCCCCTGGATTTGT
TGTTTTAATTGATTGTTGTTTCTTTTTGGAAAAAAAAAAAAAAAAAAGTG
GTGGGGGGGGGGGGTGTCTTGAATTCTACTTTTGTCTAGATTTTCGCTCA
CTTTTCTGTCGTGATTCTATTCGCGTAACTCTCACCTGTGTTCATTTTTT
ACTTTCTTTTGACCCTCTTCGTCATTGGCTTTCCTCTCTCTTTTATTACC
CCTCTTCTACTTAATTCCTTCCCCGTTTTTCTATTGCCTTTCTTTTTTGC
GTTCTTTCCTATCTTTCGCCTCGTTATTCTCTGTATCCCTCATATCTTAT
TCCCTCCTTCCCTCACTTTCCGCATAACTCCTACTGTATCCTTCCAATGG
CTATTTTTTATCTTTCCCTGTTTTTACTCTTTACGTTTTCCCGTCTTCTT
GCGTATCGTTATCTTGGGCCTTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_g08.b1 MSMg01no306_g08.b1 CHROMAT_FILE:
MSMg01no306_g08.b1 PHD_FILE: MSMg01no306_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:10 2005
         (321 letters)



>mm_chr4_86881306_86882026
          Length = 721

 Score =  576 bits (298), Expect = e-169
 Identities = 310/314 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaatatttgtgctgttcatctcatagcgttggactgagtaccactaaccatttc 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaatatttgtgttgttcatctcatagcgttggactgagtaccactaaccatttc 264

                                                                       
Query: 65  ccagggtcgtatgtgccaagttgtataggtggagtacagcacctgcttctgaaaccactg 124
           ||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccagggtcggaggtgtcaagttgtataggtggagtacagcacctgcttctgaaaccactg 324

                                                                       
Query: 125 ctgacgtgtgatggagcttgtgtgggtgaagctttccacaccattccatgttgacaggcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgacgtgtgatggagcttgtgtgggtgaagctttccacaccattccatgttgacaggcc 384

                                                                       
Query: 185 tctgccccacctctggggtcagtcgaagaggctgggtggctgggtttgttcaccttctcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctgccccacctctggggtcagtcgaagaggctgggtggctgggtttgttcaccttctcc 444

                                                                       
Query: 245 gtggtggcttccttggcagtaatgacagtttctctcctacctgctgctcctctgtttatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtggtggcttccttggcagtaatgacagtttctctcctacctgctgctcctctgtttatc 504

                         
Query: 305 cctcagttgactgg 318
           ||||||||||||||
Sbjct: 505 cctcagttgactgg 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)