BAC Information

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BAC

Clone NameMSMg01-306G10
Chromosome4 (Build37)
Map Location 151,633,028 - 151,785,822
singlet/doubletdoublet
Overlap geneAcot7, Gpr153, Hes3, Icmt, Rnf207, Rpl22, Chd5, Kcnab2
Upstream geneCamta1, LOC100041960, Dnajc11, Thap3, Phf13, Klhl21, Zbtb48, Tas1r1, Nol9, EG666980, Plekhg5, Tnfrsf25, Espn, LOC100043284, Hes2
Downstream geneLOC100042028, Nphp4, LOC667039, Gm833, LOC100042089, Ajap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306G10.T7 (MSMg01no306_g10.b1)MSMg01-306G10.TJ (MSMg01no306_g10.g1)
ACCAG431076AG431077
length767771
length of high quality
(start - end)
238 (128 - 365)286 (76 - 361)
definitionCHROMAT_FILE: MSMg01no306_g10.b1 PHD_FILE: MSMg01no306_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:10 2005CHROMAT_FILE: MSMg01no306_g10.g1 PHD_FILE: MSMg01no306_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,785,589 - 151,785,822)(151,633,028 - 151,633,313)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCATGAGCATGCCACCTAAGCCACAGTTGACCAAGCATTCAAGGAT
CCCATGTTTTCCAAGTGTTAAACCCGGATAGGGACTGAGCTGTGCCCTCT
AAGGATGCCACTTGAGTGGCCCACCCGTCTGTGACTGCTACGGGAACTCA
GGCTTTCTGCAAGCTGGAGAACATGTACAGGCTGTTGGCCCAGCATTCCT
GGCCGTGTGCTTCTCTGGCTGCTGGGGACTGCTGTCTTCTGGGGCTTATC
TGCTATTGGGACACAAGGTGACACTAACAAAGATCAGATCCACATGCTGC
CAGTGTCACGGTTTCTGTCGGGAGCCCCCGCCCCACACTTCCAGACAGTG
GGAGAGGTTAGAAAGGGGAGCTCTGGGCATCTGCATCAACTCAGCCATTG
CATTCGCCCGATTTGCTGTAGAAAGGCTTGCATTTAAAAATTAATAAGTG
AGCTCATTTGAGACCTTGTTAGCTGCGATTGCTCCATTTTCAGGAGAAAC
TTGGCTTCCATCGTGATTTAAGTGCAGTGTGTGGTTTTGTTCTTTATTTT
TATAGCAGCAGATGGTCACTGAACCGTTTGTCCTAGGCTGAGGCTGCTGG
GAATGAGGTGTGACTCACTCAGGGTGAGTCGAGAGCTTCTCCACTGAAGC
TTCGGTCCTCAGAGCTCTGAGCAAGAATTGGAGCCTTGAGCAATGCGCGG
TTTGACTCAAGTAAATN
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCCCCGAGGCTTCGTGTGACATTGT
GTGGCAGTTTTCCTGGGACAGAAAAGGCCCAGATTTGGGGTGTTTGCTGT
GTGGTGTGGCATCCCTGGCCACAGACCCTTCCTGCTTTGTATCACCTGGT
CTAGGTCTCAGGACCAGACATTTCTGACTTAAACTTGGGGTTAAAAGCAT
TGGATTTCTGACTTAGACATTAAACCGTGAGCAACCAGGAATTTGCCATG
GCAAGTGGTAGGAAATGGGGTCTCTTGGGTGACAGCAGATAGACACATGT
CCATTTGTTGTTTGGATTCCTCACNATGCTTGGCGAACCTGGAATTGGCT
CCTCACAGCAGTGGATAGTAATCGGAAAATAACACAAAAGCACTCATGTG
CTCCTGGGTCTCTGAGAACATCTTGCTGGTTTCTTCTTCCCTCCTTGCCT
TGCAGCCCGGATCTCAGGGACATTTAGGGAAGGGTAGAGGCACTGCAAGG
CCTGGGGTGACGAGTCTGTCTTTAGACTGAGCTAGTGACAGGCCCGGGAT
GTAGCATAGGGCATGGTTCCCACTGGCAGGTGCCCGTGTGCACCTTACAG
TGGTGTCAGGCTACCTGTTGCTGACCACCTGGCTCTTCCCTCCCTCCTTC
CCTCCCTCCCTCCCTCCCATAAATTGTCATTTTCTGCACTGAACTTCCCT
GTGTAAGCATGAAGCTTGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_g10.b1 MSMg01no306_g10.b1 CHROMAT_FILE:
MSMg01no306_g10.b1 PHD_FILE: MSMg01no306_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:10 2005
         (238 letters)



>mm_chr4_151785389_151786026
          Length = 638

 Score =  445 bits (230), Expect = e-129
 Identities = 233/234 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagggactgagctgtgccctctaaggatgccacttgagtggcccacccgtctgtgactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 atagggactgagctgtgccctctaaggatgccacttgagtggcccacccgtctgtgactg 375

                                                                       
Query: 61  ctacgggaactcaggctttctgcaagctggagaacatgtacaggctgttggcccagcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ctacgggaactcaggctttctgcaagctggagaacatgtacaggctgttggcccagcatt 315

                                                                       
Query: 121 cctggccgtgtgcttctctggctgctggggactgctgtcttctggggcttatctgctatt 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 314 cctggccgtgtgcttctctggctgctggagactgctgtcttctggggcttatctgctatt 255

                                                                 
Query: 181 gggacacaaggtgacactaacaaagatcagatccacatgctgccagtgtcacgg 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gggacacaaggtgacactaacaaagatcagatccacatgctgccagtgtcacgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no306_g10.g1 MSMg01no306_g10.g1 CHROMAT_FILE:
MSMg01no306_g10.g1 PHD_FILE: MSMg01no306_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:10 2005
         (286 letters)



>mm_chr4_151632828_151633513
          Length = 686

 Score =  538 bits (278), Expect = e-157
 Identities = 284/286 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccccgaggcttcgtgtgacattgtgtggcagttttcctgggacagaaaaggcccagatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccccgaggcttcgtgtgacattgtgtggcagttttcctgggacagaaaaggcccagatt 260

                                                                       
Query: 61  tggggtgtttgctgtgtggtgtggcatccctggccacagacccttcctgctttgtatcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggggtgtttgctgtgtggtgtggcatccctggccacagacccttcctgctttgtatcac 320

                                                                       
Query: 121 ctggtctaggtctcaggaccagacatttctgacttaaacttggggttaaaagcattggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggtctaggtctcaggaccagacatttctgacttaaacttggggttaaaagcattggat 380

                                                                       
Query: 181 ttctgacttagacattaaaccgtgagcaaccaggaatttgccatggcaagtggtaggaaa 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 ttctgacttagacattaaaccgtgagcaaccaggagtttgccatggcaagtggtaggaaa 440

                                                         
Query: 241 tggggtctcttgggtgacagcagatagacacatgtccatttgttgt 286
           ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggggtctcatgggtgacagcagatagacacatgtccatttgttgt 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)