Query= MSMg01no306_m07.b1 MSMg01no306_m07.b1 CHROMAT_FILE:
MSMg01no306_m07.b1 PHD_FILE: MSMg01no306_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:39 2005
(596 letters)
>mm_chr4_62846024_62847019
Length = 996
Score = 803 bits (415), Expect = 0.0
Identities = 464/505 (91%), Gaps = 39/505 (7%)
Strand = Plus / Minus
Query: 92 gtcactacagtcttgccttttgaacactaggacctgagtttaattcccagaaccagagac 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996 gtcactacagtcttgccttttgaacactaggacctgagtttaattcccagaaccagagac 937
Query: 152 aaattataacaacaacaacatctgggccttgtgacatgcacttgtgacatgcacttgtga 211
||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 936 aaattataacaacaacaacatttgggccttgtgacatgcacttgt--------------- 892
Query: 212 catgcacttgtgacatgcacttgtgaccccagaactgaggaggcttaggaggagaagatc 271
| |||||||||||||||||||||||||||||||||||
Sbjct: 891 ------------------a------accccagaactgaggaggcttaggaggagaagatc 856
Query: 272 ccagagtcttttctggccagcctgtccaaccagttggtaagctctgggttcagtggagaa 331
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 855 ccagagtcttttctggccagccagtccaaccagttggtaagctctgggttcagtggagaa 796
Query: 332 caactgatttccagactccacatgtgtgcacaaccccattcccctcacaaacggccccag 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 caactgatttccagactccacatgtgtgcacaaccccattcccctcacaaacggccccag 736
Query: 392 gtgtttcatgtgtacaaaaactccaaggaacaatttgttctacatgtgcctcaccccatc 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gtgtttcatgtgtacaaaaactccaaggaacaatttgttctacatgtgcctcaccccatc 676
Query: 452 atccttcacccctaccaaacactccagccaggatgtgctgaggccctcggcccctaacgt 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 atccttcacccctaccaaacactccagccaggatgtgctgaggccctcggcccctaacgt 616
Query: 512 atctcaaatgccttcaacatgacagccaccagaaccgttttgctgtctgcacgatgagtg 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 atctcaaatgccttcaacatgacagccaccagaaccgttttgctgtctgcacgatgagtg 556
Query: 572 cactgcagaccttgcccgttgttgg 596
|||||||||||||||||||||||||
Sbjct: 555 cactgcagaccttgcccgttgttgg 531
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space: 577796
Effective search space used: 577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no306_m07.g1 MSMg01no306_m07.g1 CHROMAT_FILE:
MSMg01no306_m07.g1 PHD_FILE: MSMg01no306_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:39 2005
(236 letters)
>mm_chr4_62685423_62686058
Length = 636
Score = 418 bits (216), Expect = e-121
Identities = 228/232 (98%)
Strand = Plus / Plus
Query: 5 tggcttagtgtcataggccactggtgaccctgggtactgtgatctccatggagtgccatg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tggcttagtgtcataggccactggtgaccctgggtactgtgatctccatggagtgccatg 264
Query: 65 gtggaggtggccttcagaattaacgcctggttattgaaccagggaaattatagtgcaggt 124
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 265 gtggaggtggccttcagaattaacgcctggttattgaaccagggaaattagagtgcaggt 324
Query: 125 agcgttagggagttctgtgcaggagtccagttaggaagaagtccatagagctggtgcaca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agcgttagggagttctgtgcaggagtccagttaggaagaagtccatagagctggtgcaca 384
Query: 185 ggggacatcttgttcgataaaacatctggtgatgagagaaaaggatacccca 236
|||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 385 ggggacatcttgcccgagaaaacatctggtgatgagagaaaaggatacccca 436
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space: 142329
Effective search space used: 142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
