Query= MSMg01no307_a11.b1 MSMg01no307_a11.b1 CHROMAT_FILE:
MSMg01no307_a11.b1 PHD_FILE: MSMg01no307_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:58 2005
(551 letters)
>mm_chr4_93966808_93967758
Length = 951
Score = 978 bits (506), Expect = 0.0
Identities = 536/554 (96%), Gaps = 14/554 (2%)
Strand = Plus / Minus
Query: 5 gaattccgtgagtttgcaattagttaggtaaaacttcaagttctttatttattgtaagaa 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 gaattccgtgagtttgaaattagttaggtaaaacttcaagttctttatttattgtaagaa 511
Query: 65 ataaaaccatgtaaaacattggttctaccaaataaaaatcacactatatttttagagaca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ataaaaccatgtaaaacattggttctaccaaataaaaatcacactatatttttagagaca 451
Query: 125 ttaatttataaaacacttggaccaaaataattttgagcaaattttagagaggtcaagtga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ttaatttataaaacacttggaccaaaataattttgagcaaattttagagaggtcaagtga 391
Query: 185 tatattcaagagaacatagtgattgccaaccagtactcaaatttataatttctaagtagg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tatattcaagagaacatagtgattgccaaccagtactcaaatttataatttctaagtagg 331
Query: 245 accactatattattcctatcaatagcactgcagtaatttctattctattgttcatttatt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 accactatattattcctatcaatagcactgcagtaatttctattctattgttcatttatt 271
Query: 305 gtttgtagaaatagtgaacaagaccaaagcaaataaactctggacacttaataactgcat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gtttgtagaaatagtgaacaagaccaaagcaaataaactctggacacttaataactgcat 211
Query: 365 ggtttaca-------cccccccctgagtcactgaagtcatacacacacaaagaacattga 417
|||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ggtttagatataagt-------ctgagtcactgaagtcatacacacacaaagaacattga 158
Query: 418 atgtaatcatataatcatgtgtaaagtatagcagacaaaactttcagttcaagatggtgg 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 atgtaatcatataatcatgtgtaaagtatagcagacaaaactttcagttcaagatggtgg 98
Query: 478 aacttgaatcagatttcttgtactacctgaaagaactaaaatttgtactaagcgatggtg 537
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 97 aacttgaatcagatttcttgtactacctgaaagaactaaaatttgtacaaagtgatggtg 38
Query: 538 gtttctaagccacg 551
||||||||||||||
Sbjct: 37 gtttctaagccacg 24
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space: 509081
Effective search space used: 509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no307_a11.g1 MSMg01no307_a11.g1 CHROMAT_FILE:
MSMg01no307_a11.g1 PHD_FILE: MSMg01no307_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:58 2005
(296 letters)
>mm_chr4_93801609_93802302
Length = 694
Score = 516 bits (267), Expect = e-151
Identities = 283/291 (97%), Gaps = 7/291 (2%)
Strand = Plus / Plus
Query: 3 tgatgggctgagccaggggcctactgggccccaagtgtgcaggtagcacaaaagctacta 62
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 203 tgatgggctgagccaggggcctactgggccccaagtgtgcaggtag-a-aaaagctacta 260
Query: 63 aacacttaactagtgtagagtaactggaaacagcagcacacttttcatacaggaaaagcc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacacttaactagtgtagagtaactggaaacagcagcacacttttcatacaggaaaagcc 320
Query: 123 atagaaatcactggctatattcagggctaaagcaggcttcctcaaaaaaaaaaaaaaaaa 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagaaatcactggctatattcagggctaaagcaggcttcctcaaaaaaaaaaaaaaaaa 380
Query: 183 aaaaaaagagagagagagagagagagagagctaaataaagtgcttttacaatacaagatg 242
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaaaaaa-----agagagagagagagagctaaataaagtgcttttacaatacaagatg 435
Query: 243 tttgaaactccccaaactataaacaacaaaacaaataaacacacataaaac 293
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tttgaaactccccaaactataaacaacaaaacaaataaacacacataaaac 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 694
Length adjustment: 9
Effective length of query: 287
Effective length of database: 685
Effective search space: 196595
Effective search space used: 196595
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
