BAC Information

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BAC

Clone NameMSMg01-307E09
Chromosome4 (Build37)
Map Location 84,632,991 - 84,633,233
singlet/doubletsinglet
Overlap geneD530005L17Rik
Upstream geneLOC668010, Bnc2, LOC100040660, LOC624465, LOC100040284, LOC622811
Downstream geneLOC100040303, Sh3gl2, A930009N24, LOC668052
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-307E09.T7 (MSMg01no307_e09.b1)MSMg01-307E09.TJ (MSMg01no307_e09.g1)
ACCAG431690AG431691
length733740
length of high quality
(start - end)
344 (69 - 412)242 (75 - 316)
definitionCHROMAT_FILE: MSMg01no307_e09.b1 PHD_FILE: MSMg01no307_e09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:16 2005CHROMAT_FILE: MSMg01no307_e09.g1 PHD_FILE: MSMg01no307_e09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCCGCGGAATTCA
GGGATCTAACAGCATAGGAAAAATTTGAATGTCATGTCGAGCTGGTATCG
GCTTCTGGAATACCGAAAGGATCTCTCATCTTGGCTCCATCGTTTGTGCT
TGTGGGACCATCCACCACATCCACAGGGGCAACTGGATCAGGAGCCTCAT
TCTTGCAGCGTCTCACCAACCTCTCCAGCACCCAAAGAGGTTCCGTCTGG
TCCTGTGGAAACACACAAACAGACCCTCTCGCCCACGTCAACACCTGATC
TGGTCGATCCCCATTTTATATGGACACAATACCTCGTGGTAATGAGACCA
TAACCTCAATCACCTGCGTGTTCATCTGGGAAGTCAATATGAAAGTCAAG
TTTTCACTATCCCCCCCTCTGTTGGGCAATGATTTCCGTGCCCTTATGGC
AATCCGATTCACCTGCTTAAACACCTGCACTGGATATCCTGTCTGTTGTT
GTGCAAATCGACCTTGATCAAGCAACATATCTCTATCCCATGCAAATTCA
GCTTGATCAGTGAAAATAGGACATCCCAGTAAGGAGAATCTATCCTCTTT
CCAGACCTCCGGACAGAANGTCTGCCCATAGATGGCTGCCGAGGAAGCAT
ACGGAGGGGGAGCAGAAGCTAATTCACCTTCCTCCTCCGCCTCAAATCTG
TTGCCCTGACAATTCAGACCCCCTGATAAAACG
CGATGCAGTGGGAGGCCTGGCGGCCGCCTGGTTTCGAACTAGGGGTGAAC
TATAGAAGGTTACAAAAAATATCAAGTAACTCCTTTGATAAAAGCCCATC
ACATAGATATTTTTATCCAGCTTTCTATGGGAAAAAAAAGTAGATCCACA
AGTCTTTCTTTATCAGCTATTGACCAGAACAGTAAAAGCATATGGCACAA
GTTCATTAATGAACAACACAGAGAACTGTAATTTAATGAAACCACTTGAG
CTATAAAAATCAGATTTAGTTAATTCCCTCCTTCCCATTTTTTTCACGTT
TACGCTAAATCTAGGAGTCTTCCTTTGGCTACCTGAGATGATAGATAGAT
AGATAGATAGTTTTTTTGACCCCCCCCCCGATAGATAGATATACCAATAC
AGATATATACAGACCCCCCTATAGAGATATAGATATAACATGAATATATA
TAATATATACACATATATGAACACAGACAAACACCCACACATATATGCAT
GTGTATATATATATACATATATATGTATATATACACATATTTAAGGTAAG
TTTAAAATATAAAAATATCTATTTTATAAGCAAAGAGCTTATTTTCATGT
ACAATAGAAGAGCTATATGATTTTGAGTTCAAATTTTGTGAAGATGATAC
ACTATGAGTTTTAGAAAAAAGTCAGCATATATAAAATTTATAACGCACTA
TAATATAGCATATTGTTCAATAAATAACTTTGGAGAGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no307_e09.g1 MSMg01no307_e09.g1 CHROMAT_FILE:
MSMg01no307_e09.g1 PHD_FILE: MSMg01no307_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:17 2005
         (242 letters)



>mm_chr4_84632791_84633433
          Length = 643

 Score =  462 bits (239), Expect = e-135
 Identities = 242/243 (99%), Gaps = 1/243 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtaactcctttgataaaagcccatcacatagatatttttatccagctttctatggg-aa 59
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 443 agtaactcctttgataaaagcccatcacatagatatttttatccagctttctatgggaaa 384

                                                                       
Query: 60  aaaaaagtagatccacaagtctttctttatcagctattgaccagaacagtaaaagcatat 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aaaaaagtagatccacaagtctttctttatcagctattgaccagaacagtaaaagcatat 324

                                                                       
Query: 120 ggcacaagttcattaatgaacaacacagagaactgtaatttaatgaaaccacttgagcta 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggcacaagttcattaatgaacaacacagagaactgtaatttaatgaaaccacttgagcta 264

                                                                       
Query: 180 taaaaatcagatttagttaattccctccttcccatttttttcacgtttacgctaaatcta 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 taaaaatcagatttagttaattccctccttcccatttttttcacgtttacgctaaatcta 204

              
Query: 240 gga 242
           |||
Sbjct: 203 gga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 643
Length adjustment: 9
Effective length of query: 233
Effective length of database: 634
Effective search space:   147722
Effective search space used:   147722
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)