BAC Information

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BAC

Clone NameMSMg01-307F13
Chromosome4 (Build37)
Map Location 47,382,848 - 47,382,960
singlet/doubletsinglet
Overlap geneTgfbr1, LOC666236
Upstream gene5830415F09Rik, Hemgn, LOC100040643, Anp32b, Nans, Trim14, Coro2a, Tbc1d2, Gabbr2, Anks6, LOC435781, Galnt12, Col15a1
Downstream geneLOC666473, Alg2, Sec61b, LOC100040788, Nr4a3, Stx17, Txndc4, Invs
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-307F13.T7 (MSMg01no307_f13.b1)MSMg01-307F13.TJ (MSMg01no307_f13.g1)
ACCAG431739AG431740
length700749
length of high quality
(start - end)
114 (130 - 243)242 (77 - 318)
definitionCHROMAT_FILE: MSMg01no307_f13.b1 PHD_FILE: MSMg01no307_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:22 2005CHROMAT_FILE: MSMg01no307_f13.g1 PHD_FILE: MSMg01no307_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGTAATTAGCTGAGACTTAGAATTATAAATAATGCCTAAGTT
ATTTCAAAGTGGTAGAGGTTATATGCCATTTTTCTGGGAAAGCTAGATTT
TTATTACCTACATTTGGAGGTAAAATATTTTGTAGATCAGAGATTTTTAT
TTCACATTTATATGACTGCGTATTTTTCACCAAGCTCCCTTTTGGCATTC
TTGGCTGCAGGGGGGGCCCCCTTTATGGGGGGGGGGTGTTTTTTTTTTAG
AATAAAATATTTTTTTTTTTGTCGCCTTCCCTCTCTCAATTAAAAAATTT
AGTGTCACCCCCCCCTTTTTTTTTTTAATATTCCCTTTTATAAAAAAAAA
AAAACCCGCCGCCTTTTTTATATTTTTTTAACCCCCCCCCCCCCCCCCCC
CCCCATTATTACGGGGGTGGGGGGTTTTTTCCCCTCTTATATAACCCCCC
CCCCCCCCCCATAATAAAAAAAAAAAAATTTTTTTCTTGTCGGGGGGGGG
GGGGTCCGTCATTCTTTTCTCCATTCTCATTTTTTATTCTTTTACTAAAG
TATCTGCCAATCTTTACTTTATTTTTATTTCTTTGTTTTCTTACAGCGGG
GTTTCTTATTAATATTTTCTTTCTTTCATAATCTTTATATATTATTTCCG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGATAGCCAGGGCTACACAGAG
AAGCCCTATCTCGAAAAACAAAGAAAAAAGAAAAGAGAAAAAGAGAAGTT
ATTGATATATAAATCTGACTTGTTTATTATAAGCTTCTAGAGTTTTGTTT
CTACCAGGTAGCTGGGTATTGTGGGGGGCTGACCCTGGGGTGGACGTTCA
TTGCGTGGTGCTGGCATGGCAGCGAAGGGAACTTGGGAACTCGGGAGCTC
TGGCTCACCAGAGAGTGGCTTTTATAGAGTAGCTGGAAGGAGCATGGGAA
CTAATATTTTNGGTAACTTTACCCAATCCAATCCTCTCTCTATTGAAATC
CCATTCCTGTGTGGGCCCCGCTGACAGAAAACCTGTCTATAGCCAAGGAA
GCTCATCCTACCACATGAGTGGAAGATTAGAGCCTTGGTCCAGTCTGACT
CCAGTTGTACTCATGACAAATCTGACGGCAGTCAGTGCCCATGATTTGTG
TCTACTCTGCTAGCGAATGACATTTCAGATACATTAGCTATGGGCTACAG
TAGCCTGGAAACATACAATCCTGTGCATGACTGCTTCTCTGGGAAGGCTG
ACTGTAAATAGCAAAAAAAGATGTATAGGGTGTGCATATTAGCTTCCTGA
GCAGTCTTGTTTCTTATCTGGCAGGTGGCTATCTGTAATCCTCTTTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no307_f13.b1 MSMg01no307_f13.b1 CHROMAT_FILE:
MSMg01no307_f13.b1 PHD_FILE: MSMg01no307_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:22 2005
         (114 letters)



>mm_chr4_47382648_47383161
          Length = 514

 Score =  211 bits (109), Expect = 1e-59
 Identities = 112/113 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttctgggaaagctagatttttattacctacatttggaggtaaaatattttgtagatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttctgggaaagctagatttttattacctacatttggaggtaaaatattttgtagatca 260

                                                                
Query: 61  gagatttttatttcacatttatatgactgcgtatttttcaccaagctcccttt 113
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 gagatttttatttcacatttatatgactgcatatttttcaccaagctcccttt 313


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 114
Length of database: 514
Length adjustment: 8
Effective length of query: 106
Effective length of database: 506
Effective search space:    53636
Effective search space used:    53636
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)