Query= MSMg01no307_k02.b1 MSMg01no307_k02.b1 CHROMAT_FILE:
MSMg01no307_k02.b1 PHD_FILE: MSMg01no307_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:44 2005
(684 letters)
>mm_chr4_90613251_90614334
Length = 1084
Score = 1091 bits (564), Expect = 0.0
Identities = 646/680 (95%), Gaps = 12/680 (1%)
Strand = Plus / Plus
Query: 7 gaattcaaaagtatctcatagagtctgaattttgaatattatagaatatattatataact 66
||||||||||||| | ||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 207 gaattcaaaagtaagtgatagagtctgaattttgaatattatggagtatattatataact 266
Query: 67 gcaaatttctttataacctttgacttttcaagctcctaaagtaagtggtgtttgactttt 126
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 267 gcaaatttctttataacctttgacttttcaagctcctaaagtaagtggtgttttactttt 326
Query: 127 caagctcctaaagtaagtggtgtttaaactctctctctctctttctctctttctctctct 186
|||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 327 caagctcctaaagtaagtggtgtttaaactctctctctctct----------ctctctct 376
Query: 187 ctctctctctctctctctctctctctctctctcacacacacacacacaaaatcaaatcag 246
||||||||| | | | | | | | | | | | ||||||||||||||||||||||||||||
Sbjct: 377 ctctctctcacacacacacacacacacacacacacacacacacacacaaaatcaaatcag 436
Query: 247 aagcatgtaaataaaattatttacaaaggcagttgaatgtccactatactgatgagtagg 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aagcatgtaaataaaattatttacaaaggcagttgaatgtccactatactgatgagtagg 496
Query: 307 agaaagaaatatttttggcagtacagacaagtcaaaaggaccaataataaccaacaaagt 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 agaaagaaatatttttggcagtacagacaagtcaaaaggaccaataataaccaacaaagt 556
Query: 367 gttattttcctctggaaatttagaaaaaaa--tataccctttgccttaatgtaatttttc 424
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 557 gttattttcttctggaaatttagaaaaaaaaatataccctttgccttaatgtaatttttc 616
Query: 425 tatggtgaagaataccatcaatgtccattgctctaaatattctaagtggcagcttcttcc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tatggtgaagaataccatcaatgtccattgctctaaatattctaagtggcagcttcttcc 676
Query: 485 ttaaatagagcctcatttgtaaaaaagagaagcaaaaccccaagcttctcttcagaagtg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ttaaatagagcctcatttgtaaaaaagagaagcaaaaccccaagcttctcttcagaagtg 736
Query: 545 agtcccataccctcagcctgctgagggctcaatcgctgggttcctctctgtatctgcaca 604
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 737 agtcccataccctcagcctgctgagggctcaatcactgggttcctctctgtatctgcaca 796
Query: 605 ggacctcgtgacatcatgaccgccaccacaatttctcacagcctggcatagtacgtagta 664
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 797 ggacctcgtgacatcatgaccgccaccacaatttctcacagactggcatagtacgaagta 856
Query: 665 cctgaacctattttaactag 684
||||||||||||||||||||
Sbjct: 857 cctgaacctattttaactag 876
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space: 723876
Effective search space used: 723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no307_k02.g1 MSMg01no307_k02.g1 CHROMAT_FILE:
MSMg01no307_k02.g1 PHD_FILE: MSMg01no307_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:44 2005
(651 letters)
>mm_chr4_90787256_90788305
Length = 1050
Score = 1205 bits (623), Expect = 0.0
Identities = 644/651 (98%), Gaps = 1/651 (0%)
Strand = Plus / Minus
Query: 1 ctgaaggctctggtaacagggcacaaacacaccagaatttttggtgaagggaactcaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 ctgaaggctctggtaacagggcacaaacacaccagaatttttggtgaagggaactcaatg 791
Query: 61 tgttctctcctcagttttactgctggggagctcagttttttctcttttagcttagctttt 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 790 tgttctctcctcagttttactgctggggagctcag-tttttctcttttagcttagctttt 732
Query: 121 catgctccacatcaggtagacttgaccggcgaggggaaagctttgcccttcatgcttttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 catgctccacatcaggtagacttgaccggcgaggggaaagctttgcccttcatgcttttc 672
Query: 181 cagctgaaggagcttcttgctgggaaatactttggcttcatcctctttaatggttgatga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 cagctgaaggagcttcttgctgggaaatactttggcttcatcctctttaatggttgatga 612
Query: 241 aagaggtaagtgctttgaggcgaaggagagaaggagatcattcagaagccaggataatct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 aagaggtaagtgctttgaggcgaaggagagaaggagatcattcagaagccaggataatct 552
Query: 301 gggtccacatgcccgcctttggctctccctagcactgcgttcaccacccaactgtaagac 360
||||||||||||||||||||||| ||||||||||||||||| | | |||||||||||||
Sbjct: 551 gggtccacatgcccgcctttggcgctccctagcactgcgtttagtagccaactgtaagac 492
Query: 361 tggggcctaaggtgggatgcaagtgacagagttttctttcctctgtggtgaatgtagctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tggggcctaaggtgggatgcaagtgacagagttttctttcctctgtggtgaatgtagctc 432
Query: 421 tgatacttgtaccaggggccaagaaaaattattccttaacatatcctaagctgataactg 480
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 431 tgatacttgtaccaggggccaagaaaaattattctttaacatatcctaagctgataactg 372
Query: 481 aaaatcttaaattagggattctgatctcacatctgatttaatttatgaaagttaaaacca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aaaatcttaaattagggattctgatctcacatctgatttaatttatgaaagttaaaacca 312
Query: 541 gatggttgcagggtcgggtctgcattttatagatgcgcttagcaatctctgtaaggctct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gatggttgcagggtcgggtctgcattttatagatgcgcttagcaatctctgtaaggctct 252
Query: 601 gtgagggccctgctacacaccctaggtgggaatactgtgcttttcatattt 651
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gtgagggccctgctacacaccctaggtgggaatactgtgcttttcatattt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1050
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1040
Effective search space: 666640
Effective search space used: 666640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
