ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAGGCCCATACCTAAATATGATAAAAGCAATCTACAGCAAACCAGTA
TCCAACATCAAAGTAAATGGTGACAAGCTGGAAGCAATCCCACTAAAATC
ATGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTATGCAACATTGTAC
TTGAAGTCCTAGCCAATTCAAATCTTTTCAACCAAACCTTTAATCACATC
GCTTTTCTGACAACAGTTTAATTACATTATGAGTTTTGCCTATTGATANA
CAGCTTTTGTCTATTCTTAGAACATTATCCTAATACCCAGTATATCTTTG
ATTCCACTCAACAAACTTTGATANATATTTATAANNNCATATACTTCCTA
TTTTCCTCTCTCCCCCCGCCCTGGGGCATATATCCCCTTCTGGATCTGCA
TCATCCTCCACTGGCTAANCCCTCTAAATATCCCCCGTGTGTCCTNNNNN
NNNNNNNNNNNNNNNCCCCATCAGACAAAAAAAAAAAAAAATTTTNNCTT
ATATATAAAAAAAAAAAAAACAAAATTCCACCACCCNNGGGAAGAAGGGA
CTAAAGACTATANNAAGAAAATTGGNACTTATNNNNNNNNNNNNNNNNAA
AAAAAAAAAAAAGAAAAGCTTAATGGGGTNCTNTNNNNTNTTGTAAAAAA
CACTAAGAAAGGGGCGNNNNTNNNNNNNNTNNNNNNNNNTAAAAAAAAAA
AAAAA

ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTGAGATGTTCAAGTGTAGATCTG
TCCTATTTGTAGTAACAGAATCAATCTGTTGAGGAAATGACAAAGAAATC
TCTTCCAAATTGAAAATGTAAACCTCAGTTCAGCAAGCTATGCATAGATT
TGATTCCTCGTGGATGCTACAAAGTAAGAGGAAGTAAAGAAGACAATTGA
GGAGGGTAGAGCTTACCAAACTATGAACATCAAAACTTAACGATACAAAA
GGGAGGGCTGAGAGGGGAGGGACCAACAGTGATAGGCTGTTTTTTTAATA
GTTATTTGAATTTAGATATTTGAATTGAGACTGGCAAGTTTGTAAATGAA
ACCATGTCTTCATAGTTGCCACACAAACAAAACAGTTTGGGCAACACCAG
CAGTATCTGTGTCTCAAGACTATTATCCAGCATTGAACTGAAGGGAAGAA
TTCAATGATCATCTCCAATAAGGCAGCCATGGAGAAGGATTTCTTGTGTG
GGTCAAGAAGACTTAATGATATCATTAGCTGAGTCAGATTTCAGATGCAG
TCTTAGGATAAAAGAAGAAACAAATCTCCCAGGAGTCTGCCTGTGCTAAT
GGAAGCACTACACTCCAACGTTGCTATATAAAAGGTTTCTTTTCAAAATC
CATCCTTTGACTTCCTCCTTTCAGAGCATCCCATTGAAAGATGATCAAN

Query= MSMg01no307_o14.g1 MSMg01no307_o14.g1 CHROMAT_FILE:
MSMg01no307_o14.g1 PHD_FILE: MSMg01no307_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:05 2005
         (674 letters)



>mm_chr4_39559333_39560406
          Length = 1074

 Score = 1263 bits (653), Expect = 0.0
 Identities = 668/673 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgagatgttcaagtgtagatctgtcctatttgtagtaacagaatcaatctgttgagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 tctgagatgttcaagtgtagatctgtcctatttgtagtaacagaatcaatctgttgagga 814

                                                                       
Query: 61  aatgacaaagaaatctcttccaaattgaaaatgtaaacctcagttcagcaagctatgcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 aatgacaaagaaatctcttccaaattgaaaatgtaaacctcagttcagcaagctatgcat 754

                                                                       
Query: 121 agatttgattcctcgtggatgctacaaagtaagaggaagtaaagaagacaattgaggagg 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 753 agatttgattcctcgtggatgctacaaagtaagaggaagtaaggaagacaattgaggagg 694

                                                                       
Query: 181 gtagagcttaccaaactatgaacatcaaaacttaacgatacaaaagggagggctgagagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 gtagagcttaccaaactatgaacatcaaaacttaacgatacaaaagggagggctgagagg 634

                                                                       
Query: 241 ggagggaccaacagtgataggctgtttttttaatagttatttgaatttagatatttgaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ggagggaccaacagtgataggctgtttttttaatagttatttgaatttagatatttgaat 574

                                                                       
Query: 301 tgagactggcaagtttgtaaatgaaaccatgtcttcatagttgccacacaaacaaaacag 360
           |||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||
Sbjct: 573 tgagactggcaagtttgtaaatgaaaccatgtcttcatagttgctatagaaacaaaacag 514

                                                                       
Query: 361 tttgggcaacaccagcagtatctgtgtctcaagactattatccagcattgaactgaaggg 420
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 513 tttgggcaacaccagcagtatctgtgtctcaagactattatccagcatcgaactgaaggg 454

                                                                       
Query: 421 aagaattcaatgatcatctccaataaggcagccatggagaaggatttcttgtgtgggtca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aagaattcaatgatcatctccaataaggcagccatggagaaggatttcttgtgtgggtca 394

                                                                       
Query: 481 agaagacttaatgatatcattagctgagtcagatttcagatgcagtcttaggataaaaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 agaagacttaatgatatcattagctgagtcagatttcagatgcagtcttaggataaaaga 334

                                                                       
Query: 541 agaaacaaatctcccaggagtctgcctgtgctaatggaagcactacactccaacgttgct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 agaaacaaatctcccaggagtctgcctgtgctaatggaagcactacactccaacgttgct 274

                                                                       
Query: 601 atataaaaggtttcttttcaaaatccatcctttgacttcctcctttcagagcatcccatt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 atataaaaggtttcttttcaaaatccatcctttgacttcctcctttcagagcatcccatt 214

                        
Query: 661 gaaagatgatcaa 673
           |||||||||||||
Sbjct: 213 gaaagatgatcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space:   706496
Effective search space used:   706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)