BAC Information

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BAC

Clone NameMSMg01-308A07
Chromosome4 (Build37)
Map Location 43,011,641 - 43,011,983
singlet/doubletsinglet
Overlap geneVcp
Upstream geneLOC100039863, LOC100042555, 1700045I11Rik, LOC100039894, LOC100039909, EG545605, LOC674214, LOC100038965, LOC100039053, LOC100039193, LOC100039374, LOC100039930, LOC100038993, LOC100039939, Ccl19-ps3, Ccl21c, LOC100039323, LOC665845, LOC100039973, LOC100039986, 4933409K07Rik, LOC100039344, LOC100039995, EG623054, Ccl19-ps2, LOC100039331, LOC100039131, LOC100040035, LOC100040048, Il11ra2, LOC665962, LOC545614, 1700008B15Rik, Ccl19, Ccl21b, LOC100039205, LOC433698, BC049635, N28178, Dnajb5, 1700022I11Rik
Downstream geneFancg, Pigo, Stoml2, B230312A22Rik, Unc13b, 4930417M19Rik, Rusc2, 4833436C18Rik, Tesk1, Cd72, Sit1, Rmrp, LOC622404, E130306D19Rik, Car9, Tpm2, Tln1, Creb3, Gba2, 1110029E03Rik, LOC100039672, LOC100040179, Npr2, Spag8, Hint2, Serf2-ps, 4930412F15Rik, Olfr70, Olfr71, LOC100039781, 5430416O09Rik, A630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268, Olfr155, Reck, Glipr2, Ccin
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308A07.T7 (MSMg01no308_a07.b1)MSMg01-308A07.TJ (MSMg01no308_a07.g1)
ACCAG432209AG432210
length752734
length of high quality
(start - end)
128 (52 - 179)344 (77 - 420)
definitionCHROMAT_FILE: MSMg01no308_a07.b1 PHD_FILE: MSMg01no308_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:13 2005CHROMAT_FILE: MSMg01no308_a07.g1 PHD_FILE: MSMg01no308_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCACAGAATCCGCGN
AATTCTCAGTATCTCCCAAATGCACATTTANAATTACTCTTAATATTATA
ATGCCATCTTTCATTATCTTCAAACTGGCTGTACAAGGGTTTTTTTCTCC
TCCTATCTATTGTGTTATATTTTTGAGNATATCTGGAAAGTGCANNTGCT
TCACACTTATGNCCATGCTTGCTCTTGCNCNATATCTTTCTGAAACTGTA
CTCTGGCTGTTTTTGTTGNCTGTGCTTCTCATCACTTTTTGAAAANNTTG
TCATTTCTTTGACCCCTACGTCCTTCTTATATATATTACTATTTTCTACA
AACTCTTGTGATGTTCTCTCATTCATCTCCTATTTATTTTCTTGCTCTTC
TTANTTANCTTTANNAACCCCCCCCCCACNCCTAATTTTGTCATTCCTAA
TCTGCCAGTCTAGGCTCNTCTTTCTTTTNTNNNANTCACTAAAATGGGGA
AGGAAGGGAGGAGGACTACTCCCTGNNTANNAACAAATGAGGGAGAGACC
TTCTTACCCTGTTCCATGGCTTTCCTATACTACCATTTTCCCATACTCTT
TTTTTTATTAATCTTCCTGTCCTATTTCTTATATTGTAATTCCACCTGTG
TCCTCCCAATCTTTGTGTCTCTTCTTACTTATTTCTTCCTTCCCTTAAAC
CCCCNTTTTCCAATATCCACTTTAATTTTTTACTTGTTGAAAAGGGGAGG
GG
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTACACAGAG
AAACTCTGCCTCAAAAAAAAAAGAATTTTAACTTAAAAAAAAATTGAAAG
ACTGACAGAGTATTTATTTTAAAAGTGTATTTTGTTGTTTTTTTTGAGAC
AAGGGCTCAATAAGTAGACTCCCAGTGCAGCTAGCCTATAGCCTAGTAAT
GTGCTATTCTGCCTTTCTTTCAGGTTCTGGGATTATGTATGTACACAAAA
CCACCCATCCTAGCCTAGCTATTTAAAATTAAAAAAAAGTCCTTTTAGCC
AAACAACTGAGTGAATACTTCATCCCAAAGAAATGAAACCTACAACACTC
AAAACACCTAATGGCCTCAGAACCCCCGCCCTTGTATATTTTCCTACACT
TGCTAGTTTTTTGTTTGCTTTGTTTTTGTATGGGAAGCTCTAGTTTCTAA
CTAAATGGGCTGAGATGGCTAGGTTTTATTTTATGCTCTCTGACAGATGA
ACGCGGGGCTATCAGAGTCCTGAGACTCAACATAGATGCTTGCCGATAGA
GATCTGTCTATTTTGAAGAGTTAAGCCAACTCTAACCTACAAGCTCTCAA
AGCTAAGATACTAAGAATTACCCCCAACTCGGATTCTACCTCCACCGCCT
ATAAATAAACGAAAACCAACTCCTTTCTAGACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_a07.g1 MSMg01no308_a07.g1 CHROMAT_FILE:
MSMg01no308_a07.g1 PHD_FILE: MSMg01no308_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:14 2005
         (344 letters)



>mm_chr4_43011441_43012184
          Length = 744

 Score =  648 bits (335), Expect = 0.0
 Identities = 341/343 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagccagggctacacagagaaactctgcctcaaaaaaaaaagaattttaacttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggacagccagggctacacagagaaactctgcctcaaaaaaaaaagaattttaacttaa 260

                                                                       
Query: 61  aaaaaaattgaaagactgacagagtatttattttaaaagtgtattttgttgttttttttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaaaattgaaagactgacagagtatttattttaaaagtgtattttgttgttttttttg 320

                                                                       
Query: 121 agacaagggctcaataagtagactcccagtgcagctagcctatagcctagtaatgtgcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agacaagggctcaataagtagactcccagtgcagctagcctatagcctagtaatgtgcta 380

                                                                       
Query: 181 ttctgcctttctttcaggttctgggattatgtatgtacacaaaaccacccatcctagcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctgcctttctttcaggttctgggattatgtatgtacacaaaaccacccatcctagcct 440

                                                                       
Query: 241 agctatttaaaattaaaaaaaagtccttttagccaaacaactgagtgaatacttcatccc 300
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agctatttaaaaaaaaaaaaaagtccttttagccaaacaactgagtgaatacttcatccc 500

                                                      
Query: 301 aaagaaatgaaacctacaacactcaaaacacctaatggcctca 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaagaaatgaaacctacaacactcaaaacacctaatggcctca 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)