Query= MSMg01no308_a15.b1 MSMg01no308_a15.b1 CHROMAT_FILE:
MSMg01no308_a15.b1 PHD_FILE: MSMg01no308_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:15 2005
(631 letters)
>mm_chr4_7991263_7992292
Length = 1030
Score = 1149 bits (594), Expect = 0.0
Identities = 618/626 (98%), Gaps = 1/626 (0%)
Strand = Plus / Plus
Query: 6 aatttttaagtgatatcgaaactggttatatgactcttctttgcatttagaagattgtaa 65
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aatttttaagtgagat-gaaactggttatatgactcttctttgcatttagaagattgtaa 264
Query: 66 attccagagttttaaagacaagggccttttcattatgaggtagcaaatcaagggactgcc 125
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attccagagttttaaagacaggggccttttcattatgaggtagcaaatcaagggactgcc 324
Query: 126 aataaaatctacgctaccaattttcagaagcactagtgagcaccttggagtaccatctcc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aataaaatctacgctaccaattttcagaagcactagtgagcaccttggagtaccatctcc 384
Query: 186 cagtctcccatccttcagacctctgctatggaatctaatagacaacataatctaatattc 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagtctcccatccttcagacctctgctatggaatctaatagacaacataatctaatattc 444
Query: 246 cttaccaaaattcaggcttttctaggtcattttttcctctctagaagtctcagaaataca 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cttaccaaaattcaggcttttctaggtcattttttcctctctagaagtctcagaaataca 504
Query: 306 atgctaagatatgattatacttccttgattaactaatttgaaatcaagatgctcattcat 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgctaagatatgattatacttccttgattaactaatttgaaatcaagatgctcattcat 564
Query: 366 ctaaaatgaacacccgtttatatgtaatgagtctcttgtgtaagaatatcacagcaactt 425
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctaaaatgaacagttgtttatatgtaatgagtctcttgtgtaagaatatcacagcaactt 624
Query: 426 ttcaactgttcattatgaaatgtgcatatccagtccagtgtttgacaacagaaaagaaag 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttcaactgttcattatgaaatgtgcatatccagtccagtgtttgacaacagaaaagaaag 684
Query: 486 cctgaacatacgggttcttacccatccttcaacctcttcatgcaatcttacacaatacca 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cctgaacatacgggttcttacccatccttcaacctcttcatgcaatcttacacaatacca 744
Query: 546 gtgttatagatatatttagttaagagtgaaattaagctgtaagattaagtgtagattttc 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gtgttatagatatatttagttaagagtgaaattaagctgtaagattaagtgtagattttc 804
Query: 606 attcaagctactggaaactttggtcc 631
|||||||||||||| ||| |||||||
Sbjct: 805 attcaagctactggcaaccttggtcc 830
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1030
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1020
Effective search space: 633420
Effective search space used: 633420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no308_a15.g1 MSMg01no308_a15.g1 CHROMAT_FILE:
MSMg01no308_a15.g1 PHD_FILE: MSMg01no308_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:15 2005
(339 letters)
>mm_chr4_8052109_8052849
Length = 741
Score = 528 bits (273), Expect = e-154
Identities = 326/349 (93%), Gaps = 15/349 (4%)
Strand = Plus / Minus
Query: 1 catacatgaatactgtgtttatattatttccatccctccctcaccctcacccctcacctc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 610 catacatgaatactgtgtttatattatttccatccctccctcaccctcacccctcaccgc 551
Query: 61 atcctcaccactccatctcaaattcatgacttcttctttattattgtt------atacac 114
|||||||||||||| |||||||||||||| |||||||||||||||| | ||||
Sbjct: 550 atcctcaccactccgtctcaaattcatga---cttctttattattgttacacacacacac 494
Query: 115 acatacacacacacacacacacacacacacacacacagccta-tgagtcactcagccttt 173
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 493 acacacacacacacacacacacacacacacacacacagcctactgagtcactcagccttt 434
Query: 174 ctcaaatgtacatgtgtttggaatttgattgctggagctcttttt-gaaaaaaaaactag 232
||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 433 ctcaaatgtacctgtgtttggaatttgattgctggggctctttttggaaaaaaaaactag 374
Query: 233 aaaccattttatttatttattctattattattatta-t-tactgttgttattgtttgtat 290
|||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct: 373 aaaccattttatttatttattctattattattattactgt--tgttgttattgtttgtat 316
Query: 291 gtgacataagtgtttgagtgtgagcactataatcctaaagtacacatgg 339
|||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 315 gtgacataagtgtttgtgtgtgagcactataatcccaaagtacacatgg 267
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 741
Length adjustment: 9
Effective length of query: 330
Effective length of database: 732
Effective search space: 241560
Effective search space used: 241560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
