BAC Information

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BAC

Clone NameMSMg01-308E10
Chromosome4 (Build37)
Map Location 51,032,773 - 51,213,073
singlet/doubletdoublet
Overlap geneLOC666681
Upstream geneLOC666663, LOC100040979
Downstream geneLOC100040814, LOC384015
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308E10.T7 (MSMg01no308_e10.b1)MSMg01-308E10.TJ (MSMg01no308_e10.g1)
ACCAG432402AG432403
length706704
length of high quality
(start - end)
369 (36 - 404)237 (58 - 294)
definitionCHROMAT_FILE: MSMg01no308_e10.b1 PHD_FILE: MSMg01no308_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:33 2005CHROMAT_FILE: MSMg01no308_e10.g1 PHD_FILE: MSMg01no308_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,032,773 - 51,033,135)(51,212,837 - 51,213,073)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAAT
ATCCACCGACTGCCAATAGTTCCTCGAATAATTTAAATAGAAATAAGTTT
AGTAGATAATTCTATGTATGTAATCTCCATAGGTGGTAAAATTATATACA
TTTTAAAAGTTTATTATAATCATACAGGTACATAAATATAAATATGCAAT
ATGCATTGATGTTTTAAGAATAATAGCATAACTTAGTGACTAGGAATTGA
GAGGCCACATCTAAAACTAATTTCATTCTTACTCACTGACAAAATTTTTC
ACATTGCATTTGTGTATGACTTATTCTGCACGTTATACCTGGGCCCTCAC
TCTTTGAATGTGCATTGCACACTTGTAGCTTTGATTGGATGACAGAATTA
CCCCCCCCCCACTATCTCCTCTGAAGCATAAATATGCACATGCACACACA
CACACACACACACACACACGAGAGACTCTCTCTCTCATATATATATATAT
ATATAATTTTAATTTTATAAATTTAGAACTTTTGTCAAAGTGAAAATTTT
ATGAATGAACAAATTTTGAGCTCAAATAGAATTTATGATATGCACCCGAA
TCTCAACCATTTCAAAGTACAAAAAACAAAACACAAACTGTAGTATGCTT
TTGATGCCAGGTCTAATTTATCATTCCTTCCATTTCACGATAATGGAAAC
TTCTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAAAGATAGGTGAGAATGAAATGGGAAGTATCCTAAGGATGTTT
CCAACTCTATTAACTGTTAAAGAAACCAATGCATAAACTATGAGTACGTC
TACATGGAGAACTAAAGTGGATATTACTATTGTCTGTGTGGAGTTTTGTA
TTAAAAAGTGTGACATGGGACCATTGGTTATCCATCTCCCTAGGCAGCAG
TAGAGTAGGCATTTTAAAGCATAATAATTTCTTCCCTGACACATGTGCTA
TGTACCTTGCCATCACTGTGATCAAATTACTCAACACTTTTAATTATTTC
CCCCCCCCCCCATAATTGACTCAAAGTGACACAGGGTTAAGTTACCCCCC
CCCAAAAAAAAAATAGATTTAGAGGGCGGGCCGCTTCATGTCATGTTAGC
TTAGGATAAAATGTAAAGAAATTCTGGGTCTCATATCTTTTGCTCTCCTT
TCCCCACTTTTATTCTCATACAGTATCCCAGTCACAGACTCACGTGTTTT
ACATTCCATGTGCCTATCTCCCTGTTGCTTCTTCGCCATTGTCCCCTCTA
CTTACTTAGAGGTATGCCTCCCCCTCCTTATTTTTTTCTTATTCCTCCTA
TTTCCACCCCCATTTTTCACCCCCTCATCCTTTTATTTTTGTCCCCCTCT
CCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_e10.b1 MSMg01no308_e10.b1 CHROMAT_FILE:
MSMg01no308_e10.b1 PHD_FILE: MSMg01no308_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:33 2005
         (369 letters)



>mm_chr4_51032569_51033337
          Length = 769

 Score =  663 bits (343), Expect = 0.0
 Identities = 358/363 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcaatatccaccgactgccaatagttcctcgaataatttaaatagaaataagtt 64
           |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaacatctaccgactgccaatagttcctcgaataatttaaatagaaataagtt 264

                                                                       
Query: 65  tagtagataattctatgtatgtaatctccataggtggtaaaattatatacattttaaaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagtagataattctatgtatgtaatctccataggtggtaaaattatatacattttaaaag 324

                                                                       
Query: 125 tttattataatcatacaggtacataaatataaatatgcaatatgcattgatgttttaaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttattataatcatacaggtacataaatataaatatgcaatatgcattgatgttttaaga 384

                                                                       
Query: 185 ataatagcataacttagtgactaggaattgagaggccacatctaaaactaatttcattct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 385 ataatagcataacttagtgactaggaattgagaggccacatctaaaactaatttcgttct 444

                                                                       
Query: 245 tactcactgacaaaatttttcacattgcatttgtgtatgacttattctgcacgttatacc 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 445 tactcactgacaaaatttttcacattgcatttgtgtatgacttattctgcacattatacc 504

                                                                       
Query: 305 tgggccctcactctttgaatgtgcattgcacacttgtagctttgattggatgacagaatt 364
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 505 tgggccctcactctttgaatgtgcattgcacacttgtagctttgatgggatgacagaatt 564

              
Query: 365 acc 367
           |||
Sbjct: 565 acc 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no308_e10.g1 MSMg01no308_e10.g1 CHROMAT_FILE:
MSMg01no308_e10.g1 PHD_FILE: MSMg01no308_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:33 2005
         (237 letters)



>mm_chr4_51212637_51213273
          Length = 637

 Score =  451 bits (233), Expect = e-131
 Identities = 236/237 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagataggtgagaatgaaatgggaagtatcctaaggatgtttccaactctattaactgt 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aaagataggttagaatgaaatgggaagtatcctaaggatgtttccaactctattaactgt 378

                                                                       
Query: 61  taaagaaaccaatgcataaactatgagtacgtctacatggagaactaaagtggatattac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 taaagaaaccaatgcataaactatgagtacgtctacatggagaactaaagtggatattac 318

                                                                       
Query: 121 tattgtctgtgtggagttttgtattaaaaagtgtgacatgggaccattggttatccatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tattgtctgtgtggagttttgtattaaaaagtgtgacatgggaccattggttatccatct 258

                                                                    
Query: 181 ccctaggcagcagtagagtaggcattttaaagcataataatttcttccctgacacat 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ccctaggcagcagtagagtaggcattttaaagcataataatttcttccctgacacat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)