BAC Information

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BAC

Clone NameMSMg01-308E18
Chromosome4 (Build37)
Map Location 77,341,511 - 77,341,795
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667858, LOC667862
Downstream geneLOC100039974, LOC100039996
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308E18.T7 (MSMg01no308_e18.b1)MSMg01-308E18.TJ (MSMg01no308_e18.g1)
ACCAG432418AG432419
length720724
length of high quality
(start - end)
---285 (77 - 361)
definitionCHROMAT_FILE: MSMg01no308_e18.b1 PHD_FILE: MSMg01no308_e18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:35 2005CHROMAT_FILE: MSMg01no308_e18.g1 PHD_FILE: MSMg01no308_e18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGACTATCTAAGATAATTGATCAATTGACCTATTTTTTAATTAT
TCTGACCATCTACCCATTTCCATATACGTTCGATATATACGTATCTGATA
TCTCGGAATCCCTGATAATCTGATACAACTACCTACTACTTTTACCTACT
GCACTATTCTCCAATACCCATTTATTTTCATCCTTTGCGTAGTGATATCA
TTACTCCTTGCAATGTATTATTCTCTTGACCTTATTCATGTCTTTCGTAT
AATGTCTGTTCAAGTGCTATTTTTATGTTCAGTCTGAAATACCTTTATGC
AACGATTAGCATTTTTTTACTTGATCTAGAAATGAGTCTGAGCTGCTTGA
AAATCGTCTTCTCCCCCCCCCCCCTGAAAAATGATGAAAATCTCACAGCT
CCTCCTCTGCCAAATCAGACTAGGACATAGCCTTGCTCCCTTATTATCAT
TAATGCTCTGCGCCTCCGAGTCTGCAAGCATACCTAGTTAACTAGCGATC
ATTATAAGAGTAGCCGTGCTGACAGAGATTTCTCACGCTCATGGAAATAT
GAAGACTCCCCCCATATGAAGATTACTCCAATAGCTACTGACTCGAACAG
CCAATTCAGACTACCATATAGCCAGAATCAACCTTCCTCCATGATGACTA
TTATCTCCTCGAGATCACGT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATAAAATCTGGTTCACACAATTC
TCTTATTTCAGGTAGTCTGTTTTTTCAGTGCATAAATTTTCTTCCATACA
CACTTTAATCCTTGGCCTCATGGTGAATAATTTTATATTTCCCATTACTG
TTTTACTCTCAAATGAAAATAATTGATTAAAAACTAATGAAAACTAAGGA
GTTATAAATAGCATGGAACATAGCTGCATTTCCCTGAAGATAGTAAGGAA
CCATCAGTGCAGGTTTTGCCCTTTATAGATTACCTTATCTGTACAAGTGA
GATAACTTTACTTTNATAATTACCCCCCCCCCCCCTTATAGCCTGAGTTC
AATGCCAGGAACCCACCCCCCCCCCCAAAATAAAATTATAAAAGATGTCG
TCTGACCTCTATTTGTGGTCTGTGGGATGCATGCGGTTTCCTCCTCACAC
AACTCAATCAATTAATTAAGCAATCATTTAATTAAAACTAATTGAATATG
CCTTATCTACCATGCAGTTGGTTGTCTACCTTATTATAATTCCTCACTGG
TGTGGAACACATTTCTTCACCCGATTAAAATACTTGTCAACGCACCATTC
TATTTATTTACAAATACCCCCCACTCCGCCCGCCCATAATGCGCCACATG
ACTATTTTCTCTTGAGCGAATACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_e18.g1 MSMg01no308_e18.g1 CHROMAT_FILE:
MSMg01no308_e18.g1 PHD_FILE: MSMg01no308_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:35 2005
         (285 letters)



>mm_chr4_77341311_77341995
          Length = 685

 Score =  536 bits (277), Expect = e-157
 Identities = 283/285 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tataaaatctggttcacacaattctcttatttcaggtagtctgttttttcagtgcataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tataaaatctggttcacacaattctcttatttcaggtagtctgttttttcagtgcataaa 426

                                                                       
Query: 61  ttttcttccatacacactttaatccttggcctcatggtgaataattttatatttcccatt 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 425 ttttcttccatacacactttaatccttggccttatggtgaataattttatatttcccatt 366

                                                                       
Query: 121 actgttttactctcaaatgaaaataattgattaaaaactaatgaaaactaaggagttata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 actgttttactctcaaatgaaaataattgattaaaaactaatgaaaactaaggagttata 306

                                                                       
Query: 181 aatagcatggaacatagctgcatttccctgaagatagtaaggaaccatcagtgcaggttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aatagcatggaacatagctgcatttccctgaagatagtaaggaaccatcagtgcaggttt 246

                                                        
Query: 241 tgccctttatagattaccttatctgtacaagtgagataactttac 285
           ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 245 tgccctttaaagattaccttatctgtacaagtgagataactttac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)