Query= MSMg01no308_n14.b1 MSMg01no308_n14.b1 CHROMAT_FILE:
MSMg01no308_n14.b1 PHD_FILE: MSMg01no308_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:17 2005
(586 letters)
>mm_chr4_61997516_61998501
Length = 986
Score = 1040 bits (538), Expect = 0.0
Identities = 575/594 (96%), Gaps = 13/594 (2%)
Strand = Plus / Plus
Query: 3 acacaatgcaaagctctaacatgcccaacacatgacactgcacatatgtaaaatgctcat 62
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 acacattgcaaagctctaacatgcccaacacatgacactgcacatatgtaaaatgctcat 255
Query: 63 tgatcaagcaaaattcacaacttgcatcccagagtagggctcctcgtgctgcgtcacatc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tgatcaagcaaaattcacaacttgcatcccagagtagggctcctcgtgctgcgtcacatc 315
Query: 123 aacaagataagaaccaagcagctgctaaataaacagtgccgcctctccatggggctgtgg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 aacaagataagaaccaagcagctgctaaataaacagtgccgcctctccatggggctgtgg 375
Query: 183 gaacaatgggatcacttcctcagagccacagaatgaaaaagatggagtctaagaaaa--- 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gaacaatgggatcacttcctcagagccacagaatgaaaaagatggagtctaagaaaacaa 435
Query: 240 -ttttacactcctcttcactctagcctctcacaggtaaacatctcccatatgttgacact 298
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 436 at---acactcctcttcactctagcctctcacaggtaaacatctcccatatgttgacagt 492
Query: 299 gtcaaccacgcatgtccagactctagataagaacaggttggagattctcaacatttaaac 358
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 493 gtcaaccacgcatgtccagactgtagataagaacaggttggagattctcaacatttaaac 552
Query: 359 taaattccaaaacaggcctttaccttgacaacttttcctgatcctaatttcaggcgaagc 418
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 553 taaattccaaaacaggcctttaccttgacaacttttcctgatcctaattttaggcgaagc 612
Query: 419 ggcttatctttgttagcagtagaatcaaaaacctgccatttgataaagtaaaaaaaaaaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ggcttatctttgttagcagtagaatcaaaaacctgccatttgataaagtaaaaaaaaaaa 672
Query: 479 aaaa------tcagtcagtttcaaaaacaataatcatcttaatgataatcaactaagggg 532
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 673 aaaaaaaaaatcagtcagtttcaaaaacaataatcgtcttaatgataatcaactaagggg 732
Query: 533 atcagtgcttcccaaacaggaaatgacaggtgtaacggcacatagctcctgaag 586
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 gtcagtgcttcccaaacaggaaatgacaggtgtaacggcacatagctcctgaag 786
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space: 562176
Effective search space used: 562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no308_n14.g1 MSMg01no308_n14.g1 CHROMAT_FILE:
MSMg01no308_n14.g1 PHD_FILE: MSMg01no308_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:17 2005
(290 letters)
>mm_chr4_62057934_62058623
Length = 690
Score = 547 bits (283), Expect = e-160
Identities = 286/287 (99%)
Strand = Plus / Minus
Query: 1 tgtagccactggtgacttggggccacacctcatttgtgaaagaaggaagccaaactctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tgtagccactggtgacttggggccacacctcatttgtgaaagaaggaagccaaactctcc 428
Query: 61 ctctgtatcccatattcacttgaattggaaaggttgacttcagtctccaaatgcccataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ctctgtatcccatattcacttgaattggaaaggttgacttcagtctccaaatgcccataa 368
Query: 121 ggttagtgtgtctgggctcctcactgttaccaccacgggaggaagaagggttgtgaatca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ggttagtgtgtctgggctcctcactgttaccaccacgggaggaagaagggttgtgaatca 308
Query: 181 gaggaaccaagccttgattggtaaaactttattgactgaagctttgaagatacagatgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gaggaaccaagccttgattggtaaaactttattgactgaagctttgaagatacagatgag 248
Query: 241 agcttaataggatattaggagaagtggggcatacttacaaattgtct 287
||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 247 agcttaagaggatattaggagaagtggggcatacttacaaattgtct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
