BAC Information

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BAC

Clone NameMSMg01-308P22
Chromosome4 (Build37)
Map Location 146,873,319 - 146,873,591
singlet/doubletsinglet
Overlap genenone
Upstream geneRex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701
Downstream geneOTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308P22.T7 (MSMg01no308_p22.b1)MSMg01-308P22.TJ (MSMg01no308_p22.g1)
ACCAG432915AG432916
length742730
length of high quality
(start - end)
658 (74 - 731)283 (437 - 719)
definitionCHROMAT_FILE: MSMg01no308_p22.b1 PHD_FILE: MSMg01no308_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:28 2005CHROMAT_FILE: MSMg01no308_p22.g1 PHD_FILE: MSMg01no308_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:28 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAGATTGTCTCTGTTAGTAAACCATTTCTCAGATTTCTCTCATT
TGTAAGGTTTCTCTCCTCTATGACACTTCTGATGAATACTAAGATGGGAT
TTTCGGGTAAAGAATTTGTGACATTCACTACATTTGTAAGGTTTCTCTCT
TGTATGAATTCTCTGTTGAGTTCTCAGTATGTCTTTTTCAGTAAAGCATT
TGTACCATTCACTACATTTGTAAGGTTTCTCTCCTTTATGGATTCTCTGA
TGAATACTAAGATGGAATTTTTGGGTAAAGAATTTGTCACATTGACTACA
TTTGTAAGGTTTCTCTTCTGTATGAATTCTCTGATGCATACTAAGATTGG
ATTGTCTGGTACAGCATTTCCCACATTCACTACATTTGTAAGGTTTCTCT
CCTTTATGAATTCCCTGATGAATACTAAGATGGGATTTTTGGGGAGAGCA
CTTGTCACATTCATGACATTTGTAAGGTTTCTCTACTGTGTGAAGTCTCT
GATGAATTCTCAGATTACCTTTGTTAGTAAAGCATTTCTCATATTCACTG
CATTTGTAAGGCTTCTCTCCTGTATGAATTTTCTGATGAATACTAAGCTT
GGCTTGGTAGGTAAAGCATTTGTCACATTGACTATATTTGTAAGGTTTCT
CTCCTGTATGAACTTTCTGATGAATACTAAGATTGGATTTTT
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTCTCTGAAAGGGAACCTTAAAT
CCAATCAGAATATGTTTTACTATATCCCGTCTGTATTTTTGTCTATTGCT
TTAAGCACCATGTTCAAGGAAACTAATAGAAGAAAAAGACTACTTTGGGT
AATGCTTCCAGAGGATAGCCATCAACCATCGCAGGGAGGACAGATAGAAC
ATTGCCATGTTGTTGAAATAGAAAGGTGAAAGATCCTCAACCCCAGTCAT
TAAAGAGGAAGAGAGAATTAAGATGGTTTGGATCTATTATCTTTTCTCAT
AGCCAACCCCCAGTGTTATATTTTATTCACCACTGCTCCAACAACTAAAT
TCCTCAAAACATTGTGACCAACTGACGATTCAACTTTAAAAATATTATCC
AATAGGAGATTTATTCATTCATACCTATATAATCAGTCTTCTAATATCCT
TGTACTTGTTAAATTGATTTTGATATGAATGTAGAAAACAAAACTCTCAT
TTTTTGTTTGGGTTTCTTGTTTGTTTGTAAAACAGGGTCCCACACTCTAG
TCCTAACTTTCATGTGTCCTGATATAGAGACCAGAATGGCTTTTAGGTCA
CATAAATCTGCCTGCCTGAGCCCCCTGACAGCTAGGATGAAAGACCTACC
CCACTGTATCAGGCTTGAATTAAACTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_p22.g1 MSMg01no308_p22.g1 CHROMAT_FILE:
MSMg01no308_p22.g1 PHD_FILE: MSMg01no308_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:28 2005
         (283 letters)



>mm_chr4_146873119_146873801
          Length = 683

 Score =  333 bits (172), Expect = 9e-96
 Identities = 244/274 (89%), Gaps = 14/274 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaaaatattatccaataggagatttattcattcatacctatataatcagtcttctaata 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaaagtattatccaataggagatttattcattcatacctatataatcagtcttctaata 260

                                                                       
Query: 61  tccttgtacttgttaaattgattttgatatgaatgtagaaaacaaaactctc-atttttt 119
           |||||||| || ||||| |||||||||||| ||||||||||||||| ||| | |||| ||
Sbjct: 261 tccttgtaatttttaaactgattttgatatcaatgtagaaaacaaagctc-caatttctt 319

                                                                       
Query: 120 gtttgggttt-ct-------tgtttgtttg----taaaacagggtcccacactctagtcc 167
           || ||||||| ||       ||||||||||    ||||||  ||||||||||||||||||
Sbjct: 320 gtatgggtttcctgtttgtgtgtttgtttgtttataaaacttggtcccacactctagtcc 379

                                                                       
Query: 168 taactttcatgtgtcctgatatagagaccagaatggcttttaggtcacataaatctgcct 227
           | | ||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||
Sbjct: 380 tgattttcatgtgtcctgatatagaaaccagaatggcttttagatcacatcaatctgcct 439

                                             
Query: 228 gcctgagccccctgacagctaggatgaaagacct 261
           |||||||||||||||||||||||||| |||||||
Sbjct: 440 gcctgagccccctgacagctaggatggaagacct 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)