BAC Information

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BAC

Clone NameMSMg01-309B08
Chromosome4 (Build37)
Map Location 90,800,232 - 90,800,546
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp352, LOC619842, LOC435792, Ppia-ps4_804.1, LOC664840
Downstream geneLOC664848, LOC100042274, Elavl2, LOC664864, LOC620016, LOC654475, 4930577H14Rik, LOC664886
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309B08.T7 (MSMg01no309_b08.b1)MSMg01-309B08.TJ (MSMg01no309_b08.g1)
ACCAG432976AG432977
length732739
length of high quality
(start - end)
323 (46 - 368)524 (76 - 599)
definitionCHROMAT_FILE: MSMg01no309_b08.b1 PHD_FILE: MSMg01no309_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:34 2005CHROMAT_FILE: MSMg01no309_b08.g1 PHD_FILE: MSMg01no309_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGATTTCCTCAAAGTCATAGCACAAATCTTCATTTTGACCAATT
TAAAAAAAATCCACTCAGTTACCAATTTGTAGGAGTAGAAATAGAGAGCT
ATGTGATTCAAACTCACACCCTTGTTAAAAAGGTCCCTGGCCCTTGACTT
GGCTCAGCTCTGGGTTTACTGCAGGAAATATTTCTCTCCCCCCTGATATG
TGGACTATTGGCTGCACCTTCTACCCTCCCATCATCTGCTTCACATCACC
GCACACTCCAGCTGTTTCTATCCTGCACTGTAATTGCCCATTTGTATGAC
AGCCTCATTTTCTCTTTTTGTCTACCCACCCCCACCGAAAACAGGGGCCT
TGTTCATCTGTTTATCCTAACACCCCCATAAGGCATATTATATAGTGACT
GCTCAATAAACATAATGTTGGATAAAAAGTACTCAGAGAGCTGGATAGCC
TAGTACAGATAGGATGAATAGTTCCAATTCTGTGATGCTGTATGACTTCA
GATACAGGCATAGAAAGGGTATTCTTAATGGACTATGGAGCTGTATGGGT
TCAAAGTGTAAGTTGTGTCGTTCACTATCTGACATATTTTCTAAGGGACT
ATTAGCCAGCATTCACTCTTGAGTGCTGTATCCGCGGGAGCGACACATGA
TGCTCTTGTTACTACTGGAACCTCTTTCAGAA
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTACTCAAGCCCTGTATTGCCTTC
ATAATATCTGCCAGCCTTACATTTATTTTTTTCTTGGTTTTCACTCAGAT
GTTTGTTCCCCTTAAGTTCTTCTCCTCAGTTTTACTGAGGTGTTTCTTTG
TGTATTCCTTAAACTTCTTGAATTCTTTGACGAATTTTATGATTGTTTCA
GTAATTCTGTGTCCAGGCATTCCTCTATGTAATTTTTATTGGCAAACACT
TTATAGGACTGGTAGAATTTGAATAGAAGATAGTGCCTTGATCTTTCATA
TTATTAGGATTTTTGCAATGATATCTGGGCATGTAGAATTTTATTCATTC
TGTGTCTGGACAGAGCAAGCCGCAGCAGAAGAAAGAATGTGTGGGCAGTT
TAAGTCTACAGGTTGGAAATGGCTTGGGTGGAATGACTTCAGGGAGACAG
AAGGGACTGCCCCTTCTGATTCAAACCTGTGCCCTTGGAGTATATCTGAC
TGGGTATTAACATTAGATGTCACATGGGAGGAGGCCTCTGTGTTGGGTGA
TAAGTTTTGCTAGAAGCCTAGAGATTCATTGCAGTACATTTAGTGTAGGC
TACTGGATGTGAGATAGATCTGACAGTAATAGAATTGCCTGGATGGGGAT
GTCAGGGATACTCACTTAGTAGAATAGAATCTGTTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_b08.b1 MSMg01no309_b08.b1 CHROMAT_FILE:
MSMg01no309_b08.b1 PHD_FILE: MSMg01no309_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:34 2005
         (323 letters)



>mm_chr4_90800028_90800750
          Length = 723

 Score =  609 bits (315), Expect = e-179
 Identities = 315/315 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaagatttcctcaaagtcatagcacaaatcttcattttgaccaatttaaaaaaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaattcaagatttcctcaaagtcatagcacaaatcttcattttgaccaatttaaaaaaaa 460

                                                                       
Query: 65  tccactcagttaccaatttgtaggagtagaaatagagagctatgtgattcaaactcacac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tccactcagttaccaatttgtaggagtagaaatagagagctatgtgattcaaactcacac 400

                                                                       
Query: 125 ccttgttaaaaaggtccctggcccttgacttggctcagctctgggtttactgcaggaaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ccttgttaaaaaggtccctggcccttgacttggctcagctctgggtttactgcaggaaat 340

                                                                       
Query: 185 atttctctcccccctgatatgtggactattggctgcaccttctaccctcccatcatctgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 atttctctcccccctgatatgtggactattggctgcaccttctaccctcccatcatctgc 280

                                                                       
Query: 245 ttcacatcaccgcacactccagctgtttctatcctgcactgtaattgcccatttgtatga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ttcacatcaccgcacactccagctgtttctatcctgcactgtaattgcccatttgtatga 220

                          
Query: 305 cagcctcattttctc 319
           |||||||||||||||
Sbjct: 219 cagcctcattttctc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)