Query= MSMg01no309_e06.b1 MSMg01no309_e06.b1 CHROMAT_FILE:
MSMg01no309_e06.b1 PHD_FILE: MSMg01no309_e06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:48 2005
(315 letters)
>mm_chr7_135324350_135325064
Length = 715
Score = 580 bits (300), Expect = e-170
Identities = 309/312 (99%)
Strand = Plus / Minus
Query: 4 ggaattctcaaggtttgcagaatgcaccagcagagaataatgggttagccaccaggtcca 63
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ggaattctcaaggcttgcagaatgcaccagcagagaataatgggttagccaccaggtcca 390
Query: 64 tccccttccaacacccaggccttcatttccagctacatggagccagccagctatagctct 123
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tccccttccaacactaaggccttcatttccagctacatggagccagccagctatagctct 330
Query: 124 cagcatcccaagaatccctctggacaggtgtgttgctagggttacgccctgcatatgggg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cagcatcccaagaatccctctggacaggtgtgttgctagggttacgccctgcatatgggg 270
Query: 184 tcaaccggtgtccaagctcccaggtcctggaagcatctataagaaccacattaccattca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tcaaccggtgtccaagctcccaggtcctggaagcatctataagaaccacattaccattca 210
Query: 244 ccttgctgttgtgtgacaagcctttccagatgcaacccagagtcacccccagatagggaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 ccttgctgttgtgtgacaagcctttccagatgcaacccagagtcacccccagatagggaa 150
Query: 304 ccacatgagacc 315
||||||||||||
Sbjct: 149 ccacatgagacc 138
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space: 216036
Effective search space used: 216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no309_e06.g1 MSMg01no309_e06.g1 CHROMAT_FILE:
MSMg01no309_e06.g1 PHD_FILE: MSMg01no309_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:48 2005
(509 letters)
>mm_chr4_45410807_45411715
Length = 909
Score = 708 bits (366), Expect = 0.0
Identities = 469/510 (91%), Gaps = 16/510 (3%)
Strand = Plus / Minus
Query: 1 attgccaaaagatagggtgccctagttaaattccgttgtgtgcttcatcccggtaagctg 60
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 702 attgccaaaagatagggtgccctagttaaattccgttgtgtgcttcatcgtggtaagctg 643
Query: 61 gtcactgcaggctctgctattctgcttgcttctttgtgctactgctatcgacaaccaacc 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 642 gtcactgcaggctctgctattctgcttgcttctttgtgctactgctgtcgacagccaacc 583
Query: 121 agtgaggacactgtcccttgtgaatagtaactgtcatgtctgtcctgctctctggtactg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 agtgaggacactgtcccttgtgaatagtaactgtcatgtctgtcctgctctctggtactg 523
Query: 181 gactttaaacaaataaacacttccataaagttttattt-tgggagttttaatataacccc 239
|||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||
Sbjct: 522 gactttaaacaaataaacacttccataaagttttatttcaggg-gttttaatgcaacccc 464
Query: 240 acgtcgtctctctttctggtttctcagtgctacagagtgatctaaggagtgtattttgct 299
| ||| ||| | |||||||||||||||||||||||||||| |||||||||| | ||||
Sbjct: 463 aagtcttctttttttctggtttctcagtgctacagagtgagctaaggagtggagggtgct 404
Query: 300 tcccctctggccttag---gtctctttctccgggaagaaagatttcacccc----tctgc 352
|||||||||||| | ||||||||||| |||||||||||||||| |||||
Sbjct: 403 tcccctctggcc---gcccgtctctttctctgggaagaaagatttca----gggttctgc 351
Query: 353 tactcaggagcccggttgccactgtgccgtttagggatgtctgctctaagtagcagcact 412
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 350 tactcaggagcccagttgccactgtgccgtttaggaatgtctgctctaagtagcagccct 291
Query: 413 gacttctggtcaggtaggatccaactgtcaggaaccaggccaaggagtcacatagttatt 472
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 290 gacttctggtcaggtaggatccaactggcaggaaccaggccaaggagtcacatagctatt 231
Query: 473 ttgtgggtaaatgctgcaacggaaatacca 502
|| ||||||||||||| || ||||||||||
Sbjct: 230 ttctgggtaaatgctgtaatggaaatacca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
