BAC Information

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BAC

Clone NameMSMg01-309E21
Chromosome4 (Build37)
Map Location 68,797,719 - 68,797,922
singlet/doubletsinglet
Overlap genenone
Upstream geneTcp1-ps1, Dbc1
Downstream geneLOC622491, LOC433716, LOC100039888, LOC242497, LOC671064
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309E21.T7 (MSMg01no309_e21.b1)MSMg01-309E21.TJ (MSMg01no309_e21.g1)
ACCAG433133AG433134
length735738
length of high quality
(start - end)		204 (452 - 655)607 (74 - 680)
definitionCHROMAT_FILE: MSMg01no309_e21.b1 PHD_FILE: MSMg01no309_e21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:51 2005CHROMAT_FILE: MSMg01no309_e21.g1 PHD_FILE: MSMg01no309_e21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATGTTTGACATTGTAATCTATTAATAGGTGACAAGACTGTCAGTA
GAAGTTCATTTATAATGTTGCCCTTGGAACCTAATGAACATTTAGGACAT
ATTTTAGGAACTGTAATTTTTTCTTTTTGCCAGAAAGTATAAAAAAGGAC
ATAACAAAATGATTTTCCATTTCCACCGTAAAGCTAGTGAATGTGGTGAC
ATTTCTTTCGCAATTTCAGTTTTTTGCTTTTTATAACATAGAATAACACA
TATACAAACACACATATATATTTATATACACACACACACACACATATATA
TATATATATATCCATTTANGTCCANGCCCANANCCGTACCTATACCTGCC
TGTCAGAGAGAGACACACNCNCACACAANCAACAAACAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTTGAACATACATGAAC
GTTCAATAATTAGTGTGAAGGGAAAGTCTAGAAAGTCATAAAGTTTATCA
AATTCATCATTACTGGCATAGTCCTGGAATCTTACTAGCCACCCTCTACA
CTAAATTTTCTCCACACTGCCAACACTCACTGTCTTCCTTGATTATTCTT
CCTGTTGTGTACTAAGATCTTTTTGCGACTCCATTTAAGAAAGGAAGCAT
TTATTTGGGCACCAATTTGAAATGTATACAAAGAT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTGTTTGATTTCATCAGTGTGTCAAAG
GTCTATTGTTGGTTGAATTTTGCATATCAGAATGTGTACTAAAGATAGTT
GAACTTGCTTGGTGCAGCATCTTTTCTGGTTACAAACAAATACATAAATG
TACAAACCTCGACAAATAAAGTTTACAAATTTTATGCTTCTAAATATAAG
ATAAATGTTCTTGTCTTTATATTTAAAACTGTCAATGATAAATATTACAT
TTATGAAAATAATTATTTTAATGGGACTTAACAAATGAGCATTATGACAA
GCTGAGAAAGAAATTGTTGACAGAAAGGAAATGCATACAATTTAGAAACT
TTAATATTTTCACTGATGTTTGGAACAGGACTTTGCAAAACTTCATCGTG
CACTGGTCCTGCAAAGTTATAATCAGCTGTATGTATAACTCAGATATTTT
ATGAGCACTGCTTTGGAATTTTTTCAAAGTAATTAATTCCAATATAATCA
TCAGTAAGTACCAAGCCAATCCAAATTCAAGGCTATTTTCCCGATACCTA
AGAAATACTCTTCACATTATTAAGGTCATGGGAGACAAGGAATACCTAAT
GATTACCATAAAACGAAGGTGATGTCGTAGAGACTAAATCATTCAATCAG
ACATCAAATGCTTAGATTTCTTCTCTTTATATCCAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_e21.b1 MSMg01no309_e21.b1 CHROMAT_FILE:
MSMg01no309_e21.b1 PHD_FILE: MSMg01no309_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:51 2005
         (204 letters)



>mm_chr4_68797487_68798090
          Length = 604

 Score =  371 bits (192), Expect = e-107
 Identities = 201/204 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagagagagagagagagagagagagagagagcttgaacatacatgaacgttcaataatt 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 agagacagagagagagagagagagagagagagcttgaacatacatgaacgttcaataatt 377

                                                                       
Query: 61  agtgtgaagggaaagtctagaaagtcataaagtttatcaaattcatcattactggcatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 agtgtgaagggaaagtctagaaagtcataaagtttatcaaattcatcattactggcatag 317

                                                                       
Query: 121 tcctggaatcttactagccaccctctacactaaattttctccacactgccaacactcact 180
           ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 316 tccgggaatcttactagccaccctctacactaaattttctccatactgccaacactcact 257

                                   
Query: 181 gtcttccttgattattcttcctgt 204
           ||||||||||||||||||||||||
Sbjct: 256 gtcttccttgattattcttcctgt 233


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 604
Length adjustment: 8
Effective length of query: 196
Effective length of database: 596
Effective search space:   116816
Effective search space used:   116816
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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