BAC Information

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BAC

Clone NameMSMg01-309H04
Chromosome4 (Build37)
Map Location 130,761,979 - 130,762,292
singlet/doubletsinglet
Overlap genenone
Upstream geneCol16a1, Pef1, Hcrtr1, Tinagl, Gm853, Serinc2, Fabp3, Zcchc17, Wdr57, 2610200G18Rik, Pum1, LOC622577, Sdc3, Laptm5, Matn1, LOC622681, LOC100041575
Downstream geneGm831, EG664832, LOC100039799, Ptpru, Mecr, Sfrs4, EG664865, EG623230, Epb4.1, LOC666480, LOC100039835, Oprd1, LOC664894, Ythdf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309H04.T7 (MSMg01no309_h04.b1)MSMg01-309H04.TJ (MSMg01no309_h04.g1)
ACCAG433234AG433235
length785737
length of high quality
(start - end)
319 (46 - 364)501 (76 - 576)
definitionCHROMAT_FILE: MSMg01no309_h04.b1 PHD_FILE: MSMg01no309_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:02 2005CHROMAT_FILE: MSMg01no309_h04.g1 PHD_FILE: MSMg01no309_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGGCTGTGCAGAGTCCACTTGGGAGGAAGAGGCTTGTGCTAAAA
TAGATGCCCCATGGCAGAACACAGGGACAGGGTGAGCAGTGAAGGGGAGA
GAGGGCATGTGTGACAGGGTGTCCCTTGCCCTGAAAGGACTTGTATATAG
GTAGTGGGAGACAGTGGGGGTGGAGACAGGATGTCCCCCTCTTTCCTTGG
GCTGCATACAGGGCAGACAGTAGGGAGAGGGGACCTTGAGTTGTCAGGTA
TAGAGTTTCCACTTGAACAGGGGGTATCGGGCTTGCAGCCTGCCATGCAC
CATCTGGAGGGTGTTTTTTTATTCCCCCCCCCCCACCTCCTGTGAAGACA
TCAGGTGCACGGAAGCAGGCCCCCCATGCTGATAAAAACTGCAGGCAGTG
GGGGGATTAGAAACCCATCCCACTCTGTCTGCTGTACACACTAGCTTTTC
TGTGCTCTTATGTCCTCCCTGATATGATGTGTTGTGCTGCCATGAATGAG
ATTGTTCTCCCAGTTCATGGAATTGCTTTGTCGACGATTAATTACGAATT
GTCTCTGGATTACTGTATATATTGTTTTTTGCTACCTCTTATCTATTTGA
CTTTCATAACTCTTATGTCTTTTCTCCTTCTCTTCTTTTTTTCCTAATCC
CCCGATACCTCACCATACTCCCCTTTCTCTCCCTCCTCCTTTTTCTATTT
TTATTTTACCCGCCAATCTTATACTTCCTCTTCCC
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGCCCCAATTCAGCAGGAATCGA
TTATAAGAAGACTGTCATCCTTAAGTTGGGGTGGATGGTTTTGGTCATTT
TATGAATTATAGATGTGTTGTTATTTTAAGGAATGATTACAAATAATTAC
CGTCTTTGATAGGGAGGAAACAAAATACAGAGCTTAGACTCAGGGATTTC
TATCTCCTCTTTCCTCTGCTCCATCCTTTCTTTCTTAGATAAAGGGTAGA
AGGTTGAGAAGAAAAGGGGATATAGAAATATTATAAGAAATTAGACTAAT
AGAGGTAGATTACTGAATCTAACTCTTAAACCAAAAAATATTTTGTAGCA
TAATCTTACGTTGATAGACATCTTTATATTTTGATGTAAATTGAGGTTAT
GTTTTGTTACATTGATATAGAATTTTATATATTGATAAAGGTCTAAAGTT
TTCATTGGTAGAAATCTTTGTATATTGATACAAAACTTAAGATTAATTTT
GTTAGAGCATGATAGATGTATGTTTCAAAACTTAGAGAGGTATTGTGGCT
ATGTTATTCACGTGAATACTCAAGGTTTAGTTCAACTCCTTTTGATATCC
GCCATTTAAAACTGTTTTAGATATTTAATTAACTCCAGTTAATATTCAGC
CAATCATAATTTTTAGTCACGTCGTATCTCTACTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_h04.b1 MSMg01no309_h04.b1 CHROMAT_FILE:
MSMg01no309_h04.b1 PHD_FILE: MSMg01no309_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:02 2005
         (319 letters)



>mm_chr4_130761776_130762493
          Length = 718

 Score =  555 bits (287), Expect = e-162
 Identities = 308/315 (97%), Gaps = 1/315 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctggctgtgcagagtccacttgggaggaagaggcttgtgctaaaatagatgcc 63
           |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 204 ggaattcctggctgtgcagagtccactt-ggaggaaaaggcttgtgctaaaatagatgcc 262

                                                                       
Query: 64  ccatggcagaacacagggacagggtgagcagtgaaggggagagagggcatgtgtgacagg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ccatggcagaacacagggacagggtgagcagtgaaggggagagagggcatgtgtgacagg 322

                                                                       
Query: 124 gtgtcccttgccctgaaaggacttgtatataggtagtgggagacagtgggggtggagaca 183
           |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 323 gtgtcccttgccctgaaaggacttgtgtataggtagtgggagacagtgggagtggagaca 382

                                                                       
Query: 184 ggatgtccccctctttccttgggctgcatacagggcagacagtagggagaggggaccttg 243
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 383 ggatgtccccctctttccttgggctgcatacagggcagtcagtagggagaggggaccttg 442

                                                                       
Query: 244 agttgtcaggtatagagtttccacttgaacagggggtatcgggcttgcagcctgccatgc 303
           |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 443 agttgtcaggtatagagtttccacttgaacagggggcatcaggcttgcagcctgccatgc 502

                          
Query: 304 accatctggagggtg 318
           |||||||||||||||
Sbjct: 503 accatctggagggtg 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 718
Length adjustment: 9
Effective length of query: 310
Effective length of database: 709
Effective search space:   219790
Effective search space used:   219790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)