CCTTTTTCTTTTTTATATCCTCCCACCCCCATCTCCAACTCCAAATNTTC
TTTGGAGTTTNNNTTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCGCGGAATTCACTTAACTTCCTTTGTATGTAATGACT
GTTACAAGACAAAATCCATGTTAAATGATGTGAAAGCTGACTGTCATGTA
AAGTTAAGAAATAAAAGAACAAATTAAATGATATTTCAATGATAACTACT
GTCAAGTAGTTCAGAAAATCATTAATGCTTACAAACCTATATTAACATGA
GTGAAGTAAATATGTCATACAAGAAAAGAAAGACTATAACGTAACTGTAT
TTTTTCCAACTTTGCCGTGTGTTCAGAATCTTCAACTTAAGCTTTGCCTT
TGGTTCTAGGGATCTGAACTTCAGTTTTTTTTTCTCGCCCCCCCACCCCC
TCTTTTACCCATTGAACCTCAGTTCTCATTTATTTTCCCCAAAAATCTAA
TAGCTCAATGAAATATACTTTTTAAACATACATTTTACCAACTCAAAATG
CATTATTGAAATGTCTGGTTCTGAGCACCTTGTATAACCAAGGTTGACTA
TTTTACATTATGTCATCCCTGATATACGACCCACTCCCCATTCTCATTTT
TGTTTATCCTTATCCCCCTTCCCGTACCACACATTGCAATATCACATTTG
CGGCACTCTGCTCTCATATATTACTTATTACAATGCCTTTTTTCGGCCCA
AATGATTATTACCTCGCATTATCTATTTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGAGCTCCTGGTGAGCCAGCAAGGA
GTTTCAGTTTCCATTCTCTCTCTCATCTAACTCAAGCTCTGTCCAAACCG
TGAGTCCAATCAGCCACAGATATTTTCTGCAGCACTGGCAACTTTTGCCG
AAATGAATTTACAAAACATCTGTAGTGCTAAGGAAACATCTGAGGCTCTG
GAAAGCACATGTTGGGGTTGGAATCAGGGAGAAACATTCCTGATGAAGGG
AAAAAAAATAATTTCTTGATTCAGTGAGGGAACTGGAAAGTTAAGAAATT
AATATGGCTCAGGACTTGATGGATAAAAGCCCAAATTAGAATTGGTACTA
GAGAAATGGGAAGAGATGACTAGCTACCACGCCACTGTCAAGCAAGGTGT
CTTGAGAGAACTTGGCCAACTCTTATTCAACTGCCCACTGCCCATGTTGC
CACTGCAGTCCAGAGAAGTTTTAGTGAAATGATGCTAAGTGAAGCTTCAT
AGGGCTCTGGGTGTAATTTATGTCCACTCCAATACTCACATTAGACCAGT
TCTCTAGTGCCCATTTCAGTATTAGAGGACAAATATTTGGAATTATTGTC
TTAAACATAATCCATAATAAAATATCACAAGTCTTTTTCTTCCTTCCTTC
CTTCTTTCCTTCCTTCTTTCCTTCATCCTTCCTTCCTTC

Query= MSMg01no309_m09.b1 MSMg01no309_m09.b1 CHROMAT_FILE:
MSMg01no309_m09.b1 PHD_FILE: MSMg01no309_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:26 2005
         (315 letters)



>mm_chr4_85518745_85519459
          Length = 715

 Score =  563 bits (291), Expect = e-165
 Identities = 300/303 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacttaacttcctttgtatgtaatgactgttacaagacaaaatccatgttaaatgatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcacttaacttcctttgtatgtaatgactgttacaagacaaaatccatgttaaatgatgt 260

                                                                       
Query: 61  gaaagctgactgtcatgtaaagttaagaaataaaagaacaaattaaatgatatttcaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaagctgactgtcatgtaaagttaagaaataaaagaacaaattaaatgatatttcaatg 320

                                                                       
Query: 121 ataactactgtcaagtagttcagaaaatcattaatgcttacaaacctatattaacatgag 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 ataactactgtcaagtagttcagaaaatcagtaatgcttacaaacctatattaacatgag 380

                                                                       
Query: 181 tgaagtaaatatgtcatacaagaaaagaaagactataacgtaactgtattttttccaact 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 tgaagtaaatatgtcatacaagaaaagaaagactataatgtaactgtattttttccaact 440

                                                                       
Query: 241 ttgccgtgtgttcagaatcttcaacttaagctttgcctttggttctagggatctgaactt 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgccgtatgttcagaatcttcaacttaagctttgcctttggttctagggatctgaactt 500

              
Query: 301 cag 303
           |||
Sbjct: 501 cag 503


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no309_m09.g1 MSMg01no309_m09.g1 CHROMAT_FILE:
MSMg01no309_m09.g1 PHD_FILE: MSMg01no309_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:26 2005
         (522 letters)



>mm_chr4_85720291_85721212
          Length = 922

 Score =  986 bits (510), Expect = 0.0
 Identities = 519/522 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaactcaagctctgtccaaaccgtgagtccaatcagccacagatattttctgcagcact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 ctaactcaagctctgtccaaaccgtgagtccaatcagccacagatattttctgcagcact 663

                                                                       
Query: 61  ggcaacttttgccgaaatgaatttacaaaacatctgtagtgctaaggaaacatctgaggc 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 ggcaacttttgctgaaatgaatttacaaaacatctgtagtgctaaggaaacatctgaggc 603

                                                                       
Query: 121 tctggaaagcacatgttggggttggaatcagggagaaacattcctgatgaagggaaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tctggaaagcacatgttggggttggaatcagggagaaacattcctgatgaagggaaaaaa 543

                                                                       
Query: 181 aataatttcttgattcagtgagggaactggaaagttaagaaattaatatggctcaggact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 aataatttcttgattcagtgagggaactggaaagttaagaaattaatatggctcaggact 483

                                                                       
Query: 241 tgatggataaaagcccaaattagaattggtactagagaaatgggaagagatgactagcta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tgatggataaaagcccaaattagaattggtactagagaaatgggaagagatgactagcta 423

                                                                       
Query: 301 ccacgccactgtcaagcaaggtgtcttgagagaacttggccaactcttattcaactgccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ccacgccactgtcaagcaaggtgtcttgagagaacttggccaactcttattcaactgccc 363

                                                                       
Query: 361 actgcccatgttgccactgcagtccagagaagttttagtgaaatgatgctaagtgaagct 420
           |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 362 actgcccatggtgccactgcagtccagaaaagttttagtgaaatgatgctaagtgaagct 303

                                                                       
Query: 421 tcatagggctctgggtgtaatttatgtccactccaatactcacattagaccagttctcta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tcatagggctctgggtgtaatttatgtccactccaatactcacattagaccagttctcta 243

                                                     
Query: 481 gtgcccatttcagtattagaggacaaatatttggaattattg 522
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gtgcccatttcagtattagaggacaaatatttggaattattg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)