BAC Information

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BAC

Clone NameMSMg01-311C17
Chromosome4 (Build37)
Map Location 149,319,289 - 149,492,778
singlet/doubletdoublet
Overlap geneSpsb1, H6pd, Gpr157
Upstream genePex14, LOC670864, Dffa, Cort, Apitd1, LOC666774, Pgd, Kif1b, LOC100041794, Ube4b, Rbp7, LOC627985, Nmnat1, Lzic, Ctnnbip1, Clstn1, Pik3cd, D4Ertd429e, Slc25a33
Downstream geneSlc2a5, LOC435818, Car6, LOC100041882, Eno1, LOC666880, LOC384091, Rere, Slc45a1, LOC677027, Errfi1, Park7, Tnfrsf9, Uts2, Per3, Vamp3, Camta1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311C17.T7 (MSMg01no311_c17.b1)MSMg01-311C17.TJ (MSMg01no311_c17.g1)
ACCAG433747AG433748
length734735
length of high quality
(start - end)		322 (46 - 367)293 (74 - 366)
definitionCHROMAT_FILE: MSMg01no311_c17.b1 PHD_FILE: MSMg01no311_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:56 2005CHROMAT_FILE: MSMg01no311_c17.g1 PHD_FILE: MSMg01no311_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,319,289 - 149,319,605)(149,492,486 - 149,492,778)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAACGCTCTTCCTGAGCCTGAGTGGTTTCCAGGGAGGAACACTAC
TGAGGACCCAGGGACTGATCGGTGAAGCTGGGTGGTCGGGGCGGGGCCCG
GAGGTATCCCTGTCTGCAAGTTTCCACAGTAAACATCTGACAGCCGTGCA
AACCTCCGCTGTGGCAAGACCCATTGCAGGGAAGAAAGAGACCCAGTCAC
GAGGGTGCAGCTCAGACTCAGACCTCCGGGTTAGCCCTGTCTGGGCATCT
CCCTCAGTGCAGGCACTGGGACAGTCCAGACAGAGCAGGCATTCAGGGGA
CAGCGGCTGAATGATGTTTTAGGCTCTCCCCCCCTTTTTAAGTGGGGAGC
AGAAAGCCTTTTATCTCCCCCCCCCACACAAACATGAAAGCTGGGTGGTA
GGAAGGCAGGAATTGAGGGGCTTTGGAGAGCAAATGGGGTCAGGGGGAGA
CCATAGGGACTGACTCAGAATCAACACAACAGTGCACAAGGGACAGAGGA
ATCCGGGCCTCGCATCCATCACTCTGAAGAAAGTCTCTTCAAAGGGACCC
TGACACATACATATAATTTATAGGTAATTATCATAAATTGGACACTGCTG
TGCATCTTTAAGAAGCCCTCCCTCCCCAATTCTGTGCTTCACATACGCAT
ACAGCCTTCTTTCTCACAAGCGCAAAAACTCCCT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTGTATAGTCCAGGTAGGTCTTGAAC
CTGAGAGAGCCCGGTCTCGGATTCCCAAATGTTAGGGTTACAGGTCTGAG
CCTCCGGTTCAATGGGACCTTTAAAAAGGCCTTTAATAAGCACTAATGAA
CCTACGGACATTTTGGTGAGTTACAGAGCACAGAATGAGGCGGGTGGAAA
GAATACATGTGACGAATTACTAATATTTCCAGGAATTTGACCTGGGTTTA
GCAGCCATCTCTGATAAGAGCCAAGGGATTGTCTTAAAGAGAAAAAGGAG
TGGCCAGGTGCAGTTCTTATTGGCTGCACTCTACAGGGCCTTCTTCCTAC
CTTTCTCTTGGGGAAGTCCCCCCACCCACAGAGAAAAAGGATGTGAGACA
GGCCGAGCCCACCAAGCAGCCTCTCACACCTTTTACATTAAGTTGCTTCT
AAAATATTTTAAAATATCTATGTCATTTTACGTGAGTGTTTTGCCTTCAT
GTATGTGTGTACTGCATGTGGAAACTGGTGCCTGCTTAGGTCGCAAGAGG
ATGATAGATCCCCTTGAAGTGGACTTTACATGTATGGTTCTGAGCCACCA
TGTGGGTGCTGGGAACCATACCTGGCTCCTTTGCGAGAAGAACAAGAGTT
CTTAACTGCTGAGCCCTCTCTCCAGCCCTTAAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_c17.b1 MSMg01no311_c17.b1 CHROMAT_FILE:
MSMg01no311_c17.b1 PHD_FILE: MSMg01no311_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:56 2005
         (322 letters)



>mm_chr4_149319085_149319806
          Length = 722

 Score =  605 bits (313), Expect = e-178
 Identities = 316/317 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaacgctcttcctgagcctgagtggtttccagggaggaacactactgaggaccc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaacgctcttcctgagcctgagtggtttccagggaggaacactactgaggaccc 264

                                                                       
Query: 65  agggactgatcggtgaagctgggtggtcggggcggggcccggaggtatccctgtctgcaa 124
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agggactgagcggtgaagctgggtggtcggggcggggcccggaggtatccctgtctgcaa 324

                                                                       
Query: 125 gtttccacagtaaacatctgacagccgtgcaaacctccgctgtggcaagacccattgcag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtttccacagtaaacatctgacagccgtgcaaacctccgctgtggcaagacccattgcag 384

                                                                       
Query: 185 ggaagaaagagacccagtcacgagggtgcagctcagactcagacctccgggttagccctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggaagaaagagacccagtcacgagggtgcagctcagactcagacctccgggttagccctg 444

                                                                       
Query: 245 tctgggcatctccctcagtgcaggcactgggacagtccagacagagcaggcattcagggg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctgggcatctccctcagtgcaggcactgggacagtccagacagagcaggcattcagggg 504

                            
Query: 305 acagcggctgaatgatg 321
           |||||||||||||||||
Sbjct: 505 acagcggctgaatgatg 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no311_c17.g1 MSMg01no311_c17.g1 CHROMAT_FILE:
MSMg01no311_c17.g1 PHD_FILE: MSMg01no311_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:57 2005
         (293 letters)



>mm_chr4_149492204_149492896
          Length = 693

 Score =  520 bits (269), Expect = e-152
 Identities = 287/293 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgtatagtccaggtaggtcttgaacctgagagagcccggtctcggattcccaaatgtt 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 575 actgtatagtccaggtaggtcttgaacctgagagagcctggtctcggattcccaaatgtt 516

                                                                       
Query: 61  agggttacaggtctgagcctccggttcaatgggacctttaaaaaggcctttaataagcac 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 515 agggttacaggtctgagcctctggttcaatgggacctttaaaaaggcctttaataagcac 456

                                                                       
Query: 121 taatgaacctacggacattttggtgagttacagagcacagaatgaggcgggtggaaagaa 180
           |||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 455 taataaacccacggacattttggtgagttaaagagcacagaatgaggcgggtggaaagaa 396

                                                                       
Query: 181 tacatgtgacgaattactaatatttccaggaatttgacctgggtttagcagccatctctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tacatgtgacgaattactaatatttccaggaatttgacctgggtttagcagccatctctg 336

                                                                
Query: 241 ataagagccaagggattgtcttaaagagaaaaaggagtggccaggtgcagttc 293
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 335 ataagagccaagggattgtcttaaagagaaaagggagtggccaggtgcagttc 283


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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