BAC Information

Click to search

BAC

Clone NameMSMg01-311P09
Chromosome4 (Build37)
Map Location 6,008,554 - 6,008,872
singlet/doubletsinglet
Overlap genenone
Upstream gene1700012H17Rik, LOC669309
Downstream gene3110003A22Rik, Cyp7a1, Sdcbp, Nsmaf, LOC100039397, LOC100039414, Tox, LOC100039421, LOC666700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311P09.T7 (MSMg01no311_p09.b1)MSMg01-311P09.TJ (MSMg01no311_p09.g1)
ACCAG434311AG434312
length727732
length of high quality
(start - end)		315 (45 - 359)289 (76 - 364)
definitionCHROMAT_FILE: MSMg01no311_p09.b1 PHD_FILE: MSMg01no311_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:56 2005CHROMAT_FILE: MSMg01no311_p09.g1 PHD_FILE: MSMg01no311_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACCTTGTTCCCTATAAGGAGGCATGTGCTCCTTTGTCTGGGGTCAC
CATTTTGAAGAATGATTCATGCTGATTGATTTAGCAGAATAAACACTCTT
TGTCTTTGCATTCTGAGTCCGGGGTCTTCCTTCAGTGACTTTTGGACCCT
TACACCATGTTGTCAAAGAGAGAATGGACTCATAAGAGCTGTTCTCCAAT
CTCCAAACGTGAGCCCATCCACCACCAAAATAAATAAATGTAATTTTTAA
AGGAGGAACTTACTATAATATTCATTCCTAAGCCATTCCTTGGACATCTC
TGGTGACATGTTTTTGAGTTCGCCCCACCCCACCTGAGATTTTAGGAAGC
AATAATGTGCTTCCCCCCACCAACAAAGAATCCATAACAGATGGTGTCTG
TTTTATTTCCCAGATAGGGACACTCCAAGACTGCACTTTTGTAGTCTGGG
TCCTGGGTCCTGGGTCCTGGGTCCTGGGTCCTGGGTCCTGGGTCCTGGGT
CCTGGGTCCTGGGTCCTGGGTCCTGGGGTGTATCTGAAAGCAAGCTTGTC
CAGTCTCAGGGAGCAAGCTTAGAGACTAGCACTTCCCCCACAGCCTCTGT
TTCTAGTCTTTCTTCCAAAATTCTCTTTGTCCTTCTGCCCTGACTTTCCC
TTATTTCGGTGTCGCAATTTCATCCTG

TCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATGGCTGTCAGCCCTGTTGCTCATG
CTGAAATGATGCTCATTTAATACTCTTGGCATTTGTTTGTTTCTACAAGG
AATGTCAAAAGGATGCAAAGAGGCACATTGCGTGCTGAGAAACACTAAAT
AACACTCATGTATTACGAGTGAGAGGTCCCTTCAAACAGTGAAACCATCA
ACAACAAATTTTAAAAATATACAAATGCCTCACTAAAGCTCTTCAAAGTA
CATCTGCTTGCAATAGAAGAATTGAAACAAGAAATCAGAATATCACTTGC
CCCAGGGAGTTTATATTTCTGTTACCCCGCCCGCAACATCCACTTGGAGA
CGGGGTGGGGAGGAGATATCCCATCAAAAAAAAAAAAAAANGGGGGGGGG
GGGGGGGGCNCNCCNNCCCCCCCCCNNCCNCCCNCCCCCCCCCCCCCTTC
CCCNNCGCCCCCCCCCNCCCCCCCNCCCCCTCCCCCCCCCCCCCCCCCCC
GCCCCCCCCCNCCCCCCCCCCTCTTTTCCCTTCTCTCTTTTCCTTCCCGT
CTTCTTCTTTTTCCTTCCCCCTCTTCCCCTTCCCCTTCTCCCTTTTCTCT
CTCTCTTCTTTCTTCTTTTTCTCCTCTTCCCTTCTTCCTTCCCTTTTCTC
CTCTTCCTCTCCTCTCTCCCTCTTNCTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_p09.b1 MSMg01no311_p09.b1 CHROMAT_FILE:
MSMg01no311_p09.b1 PHD_FILE: MSMg01no311_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:56 2005
         (315 letters)



>mm_chr4_6008194_6008908
          Length = 715

 Score =  551 bits (285), Expect = e-161
 Identities = 307/319 (96%), Gaps = 8/319 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaccttgttccctataaggaggcatgtgctcctttgtctggggtcaccattttga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gaattcaccttgttccctataaggaggcatgtgctcctttgtctggggtcaccattttga 620

                                                                       
Query: 65  agaatgatt--------catgctgattgatttagcagaataaacactctttgtctttgca 116
           |||||||||        |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 agaatgattcacccccacatgctgattgatttagcagaataaacactctttgtctttgca 560

                                                                       
Query: 117 ttctgagtccggggtcttccttcagtgacttttggacccttacaccatgttgtcaaagag 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttctgagtccggggtcttccttcagtgacttttggacccttacaccatgttgtcaaagag 500

                                                                       
Query: 177 agaatggactcataagagctgttctccaatctccaaacgtgagcccatccaccaccaaaa 236
           ||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||
Sbjct: 499 agaatggactcataagagctgttctccaatctccaaacgtgaggccgtccaccgccaaaa 440

                                                                       
Query: 237 taaataaatgtaatttttaaaggaggaacttactataatattcattcctaagccattcct 296
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 taaataaatataatttttaaaggaggaacttactataatattcattcctaagccattcct 380

                              
Query: 297 tggacatctctggtgacat 315
           |||||||||||||||||||
Sbjct: 379 tggacatctctggtgacat 361


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |