BAC Information

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BAC

Clone NameMSMg01-312A05
Chromosome4 (Build37)
Map Location 128,435,456 - 128,436,018
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC635169, 4930465A12Rik, Hmgb4, 4930546G22Rik, Zscan20, Tlr12, Phc2
Downstream geneA3galt2, BC039093, LOC667354, Trim62, Adc, Ak2, Ibrdc3, Tmem54, Hpca, Fndc5, S100pbp, Yars, C77080, Sync, Rbbp4, Zbtb8os, 2410081M15Rik, LOC100039588, Zbtb8, Bsdc1, Tssk3, 1700125D06Rik, Marcksl1, Hdac1, Lck, BC030183, Eif3s2, 2510006D16Rik, LOC667452, Iqcc, Ccdc28b, Txlna, Kpna6, Tmem39b, Khdrbs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312A05.T7 (MSMg01no312_a05.b1)MSMg01-312A05.TJ (MSMg01no312_a05.g1)
ACCAG434350AG434351
length734736
length of high quality
(start - end)
317 (47 - 363)567 (125 - 691)
definitionCHROMAT_FILE: MSMg01no312_a05.b1 PHD_FILE: MSMg01no312_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:00 2005CHROMAT_FILE: MSMg01no312_a05.g1 PHD_FILE: MSMg01no312_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTAAAATTATATTAGTAATCACTAAGCTCTTTTATACTAGGACT
GCTATTAAGTCCTTTCTGATGTCCAAACTGCAATGAGAACTCTGCCAGCC
TTCAAGTGCCATGAGTCAATTGCTTCTGAGATAGCAAGCAGGGGTCTACA
CCTTAGAGCACATTCCAATAGGTTGTAAAACAATTAACTGAAGGTCCTAA
AAAGGGAACTAAGGTGCAAGGACAGAAGATAAAATACTGACTGGGTTTAT
CTATACAAAACTTCACTAATACCTCAGTCACAAATATTATGGTTAACTCT
CCATGAACCTGTATTTTTGGTCGCCCCACCGCCGCATGTTTAGCCAGGTA
TGCATGTAAACACTCTGTGCCCCAAACAACATATCCGATTCATGGCTTGA
ATTTATGTGTAAACTTGTGAACTTTTTACCATGTGATCGCGTACTCTGAA
AGACGTTGAAGTGCTGAGGACAAAGAGTCAGAACTGCACTCAAGAAGAAC
TGAGAGGTGAGGGCATAGCACTGGGAGTCACGGCACTACGGTCATCACAT
CAGAGCAGGAGAGGCAAAGAGCCCGAGCAGGAGAGAGCAGAGAGGACTCT
TTAGAGAGAACTTTTTAGACGAGCACTTGTGTAGAAACCTTTGAGAATTC
TTTGTATAGTTCCATGTTCCGAATTTTAATTGGG
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATCAGGAGCACAGGAGGCAGACAGA
GGTGCAGGAGGCCAGCCCAGGCCTTGGGTGCTAGGTTTGTGCGTGTTAGC
TGAGGGCATAGAAGCCAATGTAGGTGGGAAGTGGTATAAAAGAGTGTCGA
GGGCCATGATCCTTAGCTGGACAGTAAAGAGTAAAGACGGGTGGAAGCTG
AAGAAGCCAAAGGTTTGTAGTTGATGGAGACACAGCTTCTGTTGGCAGCT
GCCTGGAAGGTATTTACAGAGTGGGTCTCAAGTCTGGGACAGGCCTTGTT
TGAGCTGCTTGTAGACATCTGAAAAGGGCTCCCGTGTCTAGCCAAAAGGA
GTGGCTAAATGCACCTGTCATGAAGATGGGGAAAGCTGCTTTTCACAGGC
ACTGGAAATGACAATGGTGGGAACTAAAAACAACACGCATCATTGACAGT
TACTGAGCAAGAATAGAAGTACGTCCCATAAAGTGGAGCAAAAGGAACCC
CTTAAGGACATGTTACAATCATTATAGGAGGGGTTTTCTGCATCTCCTCA
GTGGCTGTGTGTCTGTGTTACATGTATGTGTTCATGTGTATACAGATTCA
TGCATGTGGAAGTGTGGAAGTGTGTATGTAGTATGAACCAGAGGTCATTC
GAATGAAACCCTAAGTTCAATTCTCAGCACTGAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_a05.g1 MSMg01no312_a05.g1 CHROMAT_FILE:
MSMg01no312_a05.g1 PHD_FILE: MSMg01no312_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:00 2005
         (567 letters)



>mm_chr4_128435253_128436218
          Length = 966

 Score = 1060 bits (548), Expect = 0.0
 Identities = 560/564 (99%), Gaps = 1/564 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   gtgctaggtttgtgcgtgttagctgagggcatagaagccaatgtaggtgggaagtggtat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 gtgctaggtttgtgcgtgttagctgagggcatagaagccaatgtaggtgggaagtggtat 707

                                                                       
Query: 64  aaaagagtgtcgagggccatgatccttagctggacagtaaagagtaaagacgggtggaag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 aaaagagtgtcgagggccatgatccttagctggacagtaaagagtaaagacgggtggaag 647

                                                                       
Query: 124 ctgaagaagccaaaggtttgtagttgatggagacacagcttctgttggcagctgcctgga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ctgaagaagccaaaggtttgtagttgatggagacacagcttctgttggcagctgcctgga 587

                                                                       
Query: 184 aggtatttacagagtgggtctcaagtctgggacaggccttgtttgagctgcttgtagaca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 aggtatttacagagtgggtctcaagtctgggacaggccttgtttgagctgcttgtagaca 527

                                                                       
Query: 244 tctgaaaagggctcccgtgtctagccaaaaggagtggctaaatgcacctgtcatgaagat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tctgaaaagggctcccgtgtctagccaaaaggagtggctaaatgcacctgtcatgaagat 467

                                                                       
Query: 304 ggggaaagctgcttttcacaggcactggaaatgacaatggtgggaactaaaaacaacacg 363
           |||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 466 ggggaaagctgc-tttcacgggcaccggaaatgacaatggtgggaactaaaaacaacacg 408

                                                                       
Query: 364 catcattgacagttactgagcaagaatagaagtacgtcccataaagtggagcaaaaggaa 423
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 catcattgacagtcactgagcaagaatagaagtacgtcccataaagtggagcaaaaggaa 348

                                                                       
Query: 424 ccccttaaggacatgttacaatcattataggaggggttttctgcatctcctcagtggctg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ccccttaaggacatgttacaatcattataggaggggttttctgcatctcctcagtggctg 288

                                                                       
Query: 484 tgtgtctgtgttacatgtatgtgttcatgtgtatacagattcatgcatgtggaagtgtgg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tgtgtctgtgttacatgtatgtgttcatgtgtatacagattcatgcatgtggaagtgtgg 228

                                   
Query: 544 aagtgtgtatgtagtatgaaccag 567
           ||||||||||||||||||||||||
Sbjct: 227 aagtgtgtatgtagtatgaaccag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 966
Length adjustment: 10
Effective length of query: 557
Effective length of database: 956
Effective search space:   532492
Effective search space used:   532492
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)