BAC Information

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BAC

Clone NameMSMg01-312F14
Chromosome4 (Build37)
Map Location 76,395,360 - 76,395,671
singlet/doubletsinglet
Overlap geneLOC667858
Upstream geneLOC100039884, LOC667845, Ptprd
Downstream geneLOC667862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312F14.T7 (MSMg01no312_f14.b1)MSMg01-312F14.TJ (MSMg01no312_f14.g1)
ACCAG434592AG434593
length753715
length of high quality
(start - end)
316 (38 - 353)---
definitionCHROMAT_FILE: MSMg01no312_f14.b1 PHD_FILE: MSMg01no312_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:24 2005CHROMAT_FILE: MSMg01no312_f14.g1 PHD_FILE: MSMg01no312_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGT
TGTCACTGGATCTGGGCATGCTTAGGATCTGACACTCTGACTACCCATAA
CTTATAATGTGTCTAATCTGATACTATGAAACCCAAACCAAGACGTGAAG
TTTTTTTTCTTTTAAAAAGTGAAACACAGAGCAATCTTCTTTGAATTCAG
TAGACATGAGAAGGGAGACTAGGTTTTCTGTCACCATATTTCTGAGTGGG
ATGATTTGATCCGCCTCATGGTTAGAGCCAGGTAGAAAGCCATTCCTTAC
AATAAAGAATTATCCCATCTTTCATAACTGGAAGATGCAATGTGGAAGTA
TCTCATTANNGTACCCCACCCCCCACCGGTGCTCAGACTATAATCTTAGA
GTATATATTCCCCCCAATGAAAAAAAATAAACTCATGAGTGGGGGGAAGA
TTGTAAATTCAAAAGTCCTTTTAGTGATGTCACAGACCAAACTGAGGAAC
TTCATATGACCTATAATGGTTAGAAATCAAGACAGACCCTGATCTTTGCA
CTGTGACCCTAACACATGTTATTTTCAAGTATTTTTGAATCCTATCATGT
ACAATTTATACGTTGTTATACCACATAAGTTTTGGAAGATAGAAATTTTT
CATCATTTAAGTGTCCTCGTGTTTTTACCCATAAACCCGTATATTAAACG
AATTTTTACACGATCCCGATTTAGTCCCTTTTTATCATTATTAATATTGA
CCT
GAGAAGCTGGCGACAGCGGCTTCAAAAAAGGGANCCAAGAAGTTTCCAAA
AAACTTCGGGAAGAAANCAGAATNNAACAAAAAAGAAAGTTTTTCCCTGC
CTATAGGTGAGGATCAAGAGAGGTAAATAAGTTATTTACATGTCTATAGG
AATGAAGAAATGATATGAAATAAATTAAGAAAGATCTAAGGTAATGATTA
TGGAGTGAATTTCTTTATATAAATGCACCACTCGGCAGAACTATGCCACG
CTAACCCCGTACCTGCCATTTTTTTTTTTTACACACAACCCANGCCCCAC
CGGGACAAATTGGATAAATTCCAGGAACAGGGACCAGGGTTTATTTTTTG
TGGGGTTGTTGGTCCCCCAAAATNTTTACTTCAAAGTGGCCTTTGTTCCG
GGCTCCTTTTCCTTCCTTCTTTCCCCCCTTTCCCGCTCCCCTTCGCCTGC
TTCTTGTTTCCTCTTTTCCTTGCTTCTTTGCTAGAATGTATTTTACACAA
AGACCTTTCCCTGCATCTTTAAATCCTCCGGTCATATTCTCTCATCTCAA
CTTTTCACCATTTCACATATTTCACTTTCTCTTATCCCCCACTTTACACA
ACGCTTTTTTTTTTTCCATAACAGCGACCTTAAAACACTCACCCTTTCCC
AATTCCTTATATCTCTCGTTCGTATCCTTTCAAACTCACTTTGCAACCAT
TCCACACTCACTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_f14.b1 MSMg01no312_f14.b1 CHROMAT_FILE:
MSMg01no312_f14.b1 PHD_FILE: MSMg01no312_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:24 2005
         (316 letters)



>mm_chr4_76395156_76395871
          Length = 716

 Score =  588 bits (304), Expect = e-172
 Identities = 310/312 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagttgtcactggatctgggcatgcttaggatctgacactctgactacccataac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaattcagttgtcactggatctgggcatgcttaggatctgacactctgactacccataac 457

                                                                       
Query: 65  ttataatgtgtctaatctgatactatgaaacccaaaccaagacgtgaagttttttttctt 124
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 456 ttataatgtgtctaatctgatactatgaaacccaaaccaagatgtgaagttttttttctt 397

                                                                       
Query: 125 ttaaaaagtgaaacacagagcaatcttctttgaattcagtagacatgagaagggagacta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ttaaaaagtgaaacacagagcaatcttctttgaattcagtagacatgagaagggagacta 337

                                                                       
Query: 185 ggttttctgtcaccatatttctgagtgggatgatttgatccgcctcatggttagagccag 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 336 ggttttctgtcaccatatttctgagtgggatgatttgatccgcctcatggttagggccag 277

                                                                       
Query: 245 gtagaaagccattccttacaataaagaattatcccatctttcataactggaagatgcaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gtagaaagccattccttacaataaagaattatcccatctttcataactggaagatgcaat 217

                       
Query: 305 gtggaagtatct 316
           ||||||||||||
Sbjct: 216 gtggaagtatct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)