BAC Information

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BAC

Clone NameMSMg01-312J06
Chromosome4 (Build37)
Map Location 71,057,887 - 71,058,196
singlet/doubletsinglet
Overlap genenone
Upstream geneCdk5rap2, Megf9, LOC100039565, LOC100039979
Downstream geneLOC667638, EG667649, Tle1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312J06.T7 (MSMg01no312_j06.b1)MSMg01-312J06.TJ (MSMg01no312_j06.g1)
ACCAG434756AG434757
length724728
length of high quality
(start - end)
318 (41 - 358)293 (71 - 363)
definitionCHROMAT_FILE: MSMg01no312_j06.b1 PHD_FILE: MSMg01no312_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:41 2005CHROMAT_FILE: MSMg01no312_j06.g1 PHD_FILE: MSMg01no312_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACTATTTAGAACTTATGTAATAATACTAGGCATAAGAGCCTGTTCTTGTA
ATTCCAGCACTGGGAATGCCCAACAAATAGATCCCTGGGGTTCACTGGCA
AGTCAACCATATCTAGTTAGCAACTTCAGAGCAATGAAAGACTCTGTCTT
AAAGGAGGTAGATGGCCTTTCTGAAGATAGCACCAGAGGTTATCTTCTTT
CTGTATTCCACACCTTTGCACATGTATGTACCTAGAGATATGAAGTGAAG
ACAAATTAAATATAAGATGTTTCTAATAATCAACATAAATTAAATGATAC
AGAATTTCNGTAGNGTCNTNAGACGAGAGCCCCTTCAGTATGTAAGATCT
GCTTCTTGTCNCCCCCCATAACTTGATCGAAAAGCAGGGGGGGGGGGGGT
GCTTTACTACTAACAAATCCTATTTTGATGGCTTTTAAATATTCAATAAG
GGAGAAATCAAACTAATTTTTTCACCATTTTTATTTTTTGTAATTCATTA
AATCGTGACGAGATAAACCTCTGATCGCTGCAATGCACATTTAACCATTG
TATTGATTTTACCTTTCCTCTGGCAATATTTCAGAGTTATATCACGACTC
TTTTCCTCCTAATCACCCTTTTTCGCTTCCTGTTGGATTGCCCATGTGCA
CCCTTGTTTGCTTTTTTTACCCCA
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCAGTTGAGGAATACAGAATGGCTGAGAAG
CACCTGAAAAAAAATGTCCAGTATCCTAAATCACCATGGAAATGCAAATC
AAAGCAACCCTGAGATTCTTTCCTCACACCAGTCAGAATGGCTAAGGTCA
AAAACTCAGGTGACAGCAAATGCTGTCTAGGATAAGGAGAAAAAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATC
AGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACTGGAGGATCCCG
CAATACCTCTTTTGTTTTTTATCCTCCCCCCACCTTCCAACCGGTAAGAA
GGACACATGCTCCACTATGCCGATAGAAAAAAAAAATATAATAGCGGGAA
GGTGGAAATAACCCAGATGTCCCTCAACATAGGAATGGTACATTTACACA
ATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGG
CAAATGGATGGACCTGGATGGCATCATCCTGAATGAGGTAACTCATTCAC
AAAAGAACTCACATGATATGTACTTACTGATAAGCCAAGAAACTTAGAAT
ACCCAAGATACAATATATAATTTGCAGAATCTTTGAAACTCCAGAAGATC
GAGGACCTTTATGTGGACACTTTGCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_j06.b1 MSMg01no312_j06.b1 CHROMAT_FILE:
MSMg01no312_j06.b1 PHD_FILE: MSMg01no312_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:41 2005
         (318 letters)



>mm_chr4_71057479_71058196
          Length = 718

 Score =  576 bits (298), Expect = e-169
 Identities = 307/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 9   tcactatttagaacttatgtaataatactaggcataagagcctgttcttgtaattccagc 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 tcactatttagaacttatgtaataatactaggcataagagcctgttcttgtaattccagc 659

                                                                       
Query: 69  actgggaatgcccaacaaatagatccctggggttcactggcaagtcaaccatatctagtt 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 actgggaatgcccaacaaatagatccctggggttcactggcaagtcaaccatatctagtt 599

                                                                       
Query: 129 agcaacttcagagcaatgaaagactctgtcttaaaggaggtagatggcctttctgaagat 188
           ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 598 agcaacttcagagcaatgaaagattctgtcttaaaggaggtcgatggcctttctgaagat 539

                                                                       
Query: 189 agcaccagaggttatcttctttctgtattccacacctttgcacatgtatgtacctagaga 248
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 538 agcaccagaggttatcttctttctgtattccacatctttgcacatgtatgtacctagaga 479

                                                                       
Query: 249 tatgaagtgaagacaaattaaatataagatgtttctaataatcaacataaattaaatgat 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tatgaagtgaagacaaattaaatataagatgtttctaataatcaacataaattaaatgat 419

                     
Query: 309 acagaatttc 318
           ||||||||||
Sbjct: 418 acagaatttc 409


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)