BAC Information

Click to search

BAC

Clone NameMSMg01-312L09
Chromosome4 (Build37)
Map Location 44,874,370 - 44,961,947
singlet/doubletdoublet
Overlap geneZcchc7, D4Wsu132e
Upstream geneReck, Glipr2, Ccin, Clta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38, Melk, Pax5, 5730488B01Rik, LOC545618
Downstream geneGrhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik, Frmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32, Mcart1, Shb, LOC100040140, LOC100040557, Gm829, LOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312L09.T7 (MSMg01no312_l09.b1)MSMg01-312L09.TJ (MSMg01no312_l09.g1)
ACCAG434851AG434852
length761736
length of high quality
(start - end)
235 (120 - 354)284 (68 - 351)
definitionCHROMAT_FILE: MSMg01no312_l09.b1 PHD_FILE: MSMg01no312_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:51 2005CHROMAT_FILE: MSMg01no312_l09.g1 PHD_FILE: MSMg01no312_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,874,370 - 44,874,604)(44,961,664 - 44,961,947)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAGTTTCATT
TTTTTTTTACAAGAAGTTTCTCTAATTGAATGCAGTTTTACCTTGTTGAA
GTGGATAGAATTTGACCCAATGAGTGCATACAAAGACAAAGAAAGACAAG
GTTACACTTGGCCACTGCCCTGCCTACTGGAAACCACCTTCCATGTTATA
AAATGATACCACCACAGAAGTAGGGCTGCAACTCCTACTTTCATTCCTCC
TCCGTTATCCCGTTACCTTTGGACAGAGATACATATCAGAATTCGGTAAC
TAGTGTGTCAGGTGATTAAGATATGGCCTGCTTCTATCTTCAGGGTGGCC
CAGTATTTTGTTATAACACCCCCCCCCCCGCGGTTGATTGTCTCTGAATG
GAATAGCCTCCCCCCCCCCCCCAAAAAAAAAAATTAAACTTCATTTTGTT
TGAATCTTATGATATGAACAGGGATTACTGCCTTAAACTTCAAATTAAAA
ACTCATATTATGCCTGCTGAGATGGCTCATTGCCTAATGTTATCTTAATG
CTCTTCTATATACCCATAAATCTATTCCCAGCTTCCACATGGAGTCCTCA
ACAACTATCCCAAATTATATACAGTATCCCATCCTATTGGCGATTATTAG
AACACCATATTCTCCTGATACTTCAAATATTTTAAAATATTTTTACACTT
TTCTCCATTTTTTCTCTTTCCAATCAATTTAACCTATTTTTTCTTTCCCT
TATACAATATN
AGAGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGTACTGGCAAGATATGGTAGCACCAACGGCTT
CTTCTTCTCTCTGCTTATGTGCCCAGCTTGCTTGAGGGCACTGTGAGTCA
GAGGGAAAGGGACACTCCATCACCAGGTAAGAAAGAACATGGATGACAGA
CACGAAAGTCACATTAATCCGACCAGCCAGAGCACAGCCTGATTCTTACT
TGATGTGACAGAAGTGGATTTCCCTACTCTCTCAGTACAGTCATCTCATC
TATTAGTGACAAGATCTCTAGGCGCATGGGGCTGTGGGAACCACCTGGTG
CTTTACATANATGCCNGAACTGACCCCGCCTTTGAAGTATTGGACAGAGG
AATTTATCCCCCCCCCAAAAAAAATAAACACCCCTCGGGGGGGGGCCTCC
TCCTCCCCTCCCCCCTTCTCCTTTTTGAATTGCAGATATCAAACACAGCC
TTATGCATGCTAAGCAAGAGTTCTATCACAGAACCACACCCCAGCCCCCT
GACTTGTATTGAAATTCTCTTTTTACAGGACAGGGCTTTCTGTAGACCAA
AATGCCCTTGAACTGTCTATGAAACTGAGGATGACCCATAACTTCCGTAT
CTTCTTAATTCCCTCTCCTGAGTTCTGGGATTAGAGGCTTTGTGTCACCA
TGCCTGTCTAGTTGATACCCCCTTCCCATCTATCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_l09.b1 MSMg01no312_l09.b1 CHROMAT_FILE:
MSMg01no312_l09.b1 PHD_FILE: MSMg01no312_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:51 2005
         (235 letters)



>mm_chr4_44874170_44874804
          Length = 635

 Score =  455 bits (235), Expect = e-132
 Identities = 235/235 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgagtgcatacaaagacaaagaaagacaaggttacacttggccactgccctgcctactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgagtgcatacaaagacaaagaaagacaaggttacacttggccactgccctgcctactg 260

                                                                       
Query: 61  gaaaccaccttccatgttataaaatgataccaccacagaagtagggctgcaactcctact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaccaccttccatgttataaaatgataccaccacagaagtagggctgcaactcctact 320

                                                                       
Query: 121 ttcattcctcctccgttatcccgttacctttggacagagatacatatcagaattcggtaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcattcctcctccgttatcccgttacctttggacagagatacatatcagaattcggtaa 380

                                                                  
Query: 181 ctagtgtgtcaggtgattaagatatggcctgcttctatcttcagggtggcccagt 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctagtgtgtcaggtgattaagatatggcctgcttctatcttcagggtggcccagt 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no312_l09.g1 MSMg01no312_l09.g1 CHROMAT_FILE:
MSMg01no312_l09.g1 PHD_FILE: MSMg01no312_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:51 2005
         (284 letters)



>mm_chr4_44961464_44962147
          Length = 684

 Score =  542 bits (280), Expect = e-158
 Identities = 283/284 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtactggcaagatatggtagcaccaacggcttcttcttctctctgcttatgtgcccagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tgtactggcaagatatggtagcaccaacggcttcttcttctctctgcttatgtgcccagc 425

                                                                       
Query: 61  ttgcttgagggcactgtgagtcagagggaaagggacactccatcaccaggtaagaaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ttgcttgagggcactgtgagtcagagggaaagggacactccatcaccaggtaagaaagaa 365

                                                                       
Query: 121 catggatgacagacacgaaagtcacattaatccgaccagccagagcacagcctgattctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 catggatgacagacacgaaagtcacattaatccgaccagccagagcacagcctgattctt 305

                                                                       
Query: 181 acttgatgtgacagaagtggatttccctactctctcagtacagtcatctcatctattagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 acttgatgtgacagaagtggatttccctactctctcagtacagtcatctcatctattagt 245

                                                       
Query: 241 gacaagatctctaggcgcatggggctgtgggaaccacctggtgc 284
           ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 244 gacaagagctctaggcgcatggggctgtgggaaccacctggtgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)