Query= MSMg01no313_d02.b1 MSMg01no313_d02.b1 CHROMAT_FILE:
MSMg01no313_d02.b1 PHD_FILE: MSMg01no313_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:36 2005
(364 letters)
>mm_chr4_59430813_59431576
Length = 764
Score = 659 bits (341), Expect = 0.0
Identities = 359/365 (98%), Gaps = 2/365 (0%)
Strand = Plus / Minus
Query: 1 tgttcagccacaatgttcaagtgcagtacaaattatcgacaaaaacatagtataccatta 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tgttcagctacaatgttcaagtgcagtacaaattatcgacaaaaacatagtataccatta 355
Query: 61 aatgcaaagtcttgggtgacatagaatctttcccatgggaggaaggcattctaataagct 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 aatgcaaagttttgggtgacatagaatctttcccatgggaggaaggcattctaataagct 295
Query: 121 tgatatgggtcagtcacccgagattccagtacagactagaaa-aagaatagtttctgagc 179
|| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 294 tggtatgggtcagtcacccgagattccagtacagactagaaataa-aatagtttctgagc 236
Query: 180 attataagcagcaggtgattaaaaatcaaaatcttgggactagaaagatggctcaggaga 239
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 attataagcagcaggtaattaaaaatcaaaatcttgggactagaaagatggctcaggaga 176
Query: 240 tgagagcacttgaattcaggtcccaatacccatattcgatggctcacaactgtggtaact 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 tgagagcacttgaattcaggtcccaatacccatattcgatggctcacaactgtggtaact 116
Query: 300 ctagcaccgggggatccaacatcgtcttctggctttcaagggcacctgcattcatgtggc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 ctagcaccgggggatccaacatcgtcttctggctttcaagggcacctgcattcatgtggc 56
Query: 360 acaca 364
|||||
Sbjct: 55 acaca 51
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space: 268025
Effective search space used: 268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no313_d02.g1 MSMg01no313_d02.g1 CHROMAT_FILE:
MSMg01no313_d02.g1 PHD_FILE: MSMg01no313_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:36 2005
(292 letters)
>mm_chr4_59275778_59276469
Length = 692
Score = 491 bits (254), Expect = e-143
Identities = 286/304 (94%), Gaps = 12/304 (3%)
Strand = Plus / Plus
Query: 1 cagctctcttcctgatcggacccctggctgttcttcttccaaa------------tgttc 48
|||||||||||||||||||| || ||||||||||||||||||| |||||
Sbjct: 189 cagctctcttcctgatcggagccttggctgttcttcttccaaacattcttccaaatgttc 248
Query: 49 cacctgcacccgctcacctctgtctcacctctgccgtcgtgttcagactcggcttcacat 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 cacctgcacccgctcacctctgtctcacctctgccgtcgtgttcagactcggcttcacat 308
Query: 109 ctaaccctgaccttgatctgtgagttcatcttgtctttcccagctcccctcactcttccc 168
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ctaaccctggccttgatccgtgagttcatcttgtctttcccagctcccctcactcttccc 368
Query: 169 caaaattcaaatgctctcttacactgtattgaacccagggtccttctagctaacttgatg 228
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 369 caaaattcaaatgctctcttacactgtattgaacccagggtccttcttgctaacttgatg 428
Query: 229 gcaccaaattgcacacagtagttagtgtttgtactgtctcagaagctaaggtcaaaccac 288
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gcaccaaattgcactcagtagttagtgtttgtactgtctcagaagctaaggtcaaaccac 488
Query: 289 ctgg 292
||||
Sbjct: 489 ctgg 492
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
