Query= MSMg01no313_j15.b1 MSMg01no313_j15.b1 CHROMAT_FILE:
MSMg01no313_j15.b1 PHD_FILE: MSMg01no313_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:29 2005
(751 letters)
>mm_chr4_36704283_36705434
Length = 1152
Score = 1404 bits (726), Expect = 0.0
Identities = 744/750 (99%), Gaps = 1/750 (0%)
Strand = Plus / Minus
Query: 1 gttatattgctgagtacatttaagagattctcataattattggtaatttaggtatagtta 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1115 gttatattgctgagtacatttaagagattcttataattattggtaatttaggtatagtta 1056
Query: 61 catgcacaaatcttaaacaccatcttgccaggtaacactctagcatgagtgggagagagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1055 catgcacaaatcttaaacaccatcttgccaggtaacactctagcatgagtgggagagagg 996
Query: 121 ccaacaagccacttttcattggatctgtggtcattggcaggttgaccacgctgtagttca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 995 ccaacaagccacttttcattggatctgtggtcattggcaggttgaccacgctgtagttca 936
Query: 181 tagcccctcacccatgtatacataggcaacactagttgaaatcagagggtcataataaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 tagcccctcacccatgtatacataggcaacactagttgaaatcagagggtcataataaat 876
Query: 241 ataacataaaaggacacacatttggaagggatgcatatttatggtaccttaagtgagttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 ataacataaaaggacacacatttggaagggatgcatatttatggtaccttaagtgagttt 816
Query: 301 aaggtgagactgtgggtggaaatgctcaagatatattatatattaaatacatgaatgaat 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 815 aaggtgagactgtgggtggaaatgctcaagatatattatatattaaatacatgaataaat 756
Query: 361 tatcaaatagtaaaaaaaaatgttttttttaacaacaagagactttactttcctaaatta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 tatcaaatagtaaaaaaaaatgttttttttaacaacaagagactttactttcctaaatta 696
Query: 421 cttagaggaaaatgaatcagttttccaaaatgaaacatttgaggaaatctattactgagc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 cttagaggaaaatgaatcagttttccaaaatgaaacatttgaggaaatctattactgagc 636
Query: 481 aaaatagaacagaaaggcaatagactgtgtaattaaaattttaatttgtcaaaaaaaaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 aaaatagaacagaaaggcaatagactgtgtaattaaaattttaatttgtcaaaaaaaaaa 576
Query: 541 agtgtctaaagctttaatagtagccattaacaggaacagtggtgttttagtatgctttat 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ggtgtctaaagctttaatagtagccattaacaggaacagtggtgttttagtatgctttat 516
Query: 601 taaccaaaatgcaagcataattttcattggctacacacactttgaattttgtagtcttct 660
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 515 taaccaaaatgcaagcataattttcattggctacacacactttgaattttgttgtcttct 456
Query: 661 gtttaacacattaattcagggacttaattattttt-cccgatagcagtaagtatatcatg 719
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 455 gtttaacacattaattcagtgacttaattattttttcccgatagcagtaagtatatcatg 396
Query: 720 aatttgttgttaacactttctttttttttt 749
||||||||||||||||||||||||||||||
Sbjct: 395 aatttgttgttaacactttctttttttttt 366
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 751
Length of database: 1152
Length adjustment: 10
Effective length of query: 741
Effective length of database: 1142
Effective search space: 846222
Effective search space used: 846222
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no313_j15.g1 MSMg01no313_j15.g1 CHROMAT_FILE:
MSMg01no313_j15.g1 PHD_FILE: MSMg01no313_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:29 2005
(329 letters)
>mm_chr4_36540088_36540816
Length = 729
Score = 596 bits (308), Expect = e-175
Identities = 323/328 (98%)
Strand = Plus / Plus
Query: 1 aggtactcaaacatgtacacaaatgggggccattctcattcaaaccacaaattttatttt 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtactcaaacatgtacacagatgggggccattctcattcaaaccacaaattttatttt 260
Query: 61 tatgtttataactaactctactgggagcctagacatcttccagacatttttctgtaaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatgtttataactaactctactgggagcctagacatcttccagacatttttctgtaaagt 320
Query: 121 acaaatggagtaaatcagtataactgtattctgaatgagagatctatgaaccttctagta 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaaatggagtaaatcagtatagctgtattctgaatgagagatctatgaaccttctagta 380
Query: 181 aatgtgtgggatagagtagatatgcatctttcatcacagcaagcccttgggagtcttcag 240
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 381 aatgtgtgggatagagtagatatgcatctttcagcaaagcaagcccttgggagtcttcag 440
Query: 241 tttttcttttgttgtgagtataggtctccccttaactaccccttcctgtgtgtgtgtgtg 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 tttttcttttgttgtgagtataggtctccccttaactaccccttcgtgtgtgtgtgtgtg 500
Query: 301 tgtgtgtgtgtgtgtgtgtgtgtgtgtg 328
||||||||||||||||||||||||||||
Sbjct: 501 tgtgtgtgtgtgtgtgtgtgtgtgtgtg 528
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space: 230400
Effective search space used: 230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
